Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2815 ATGGCGATTGATCTTTCTCCCCAACTGGCCAAGAAGCTTTACGGCGGCAATGGTGGCTCTTACCACGCCTGGTCCCCTTCTGAACTCCCCATGCTACGCGAAGGCAACATAGGTGCCTCCAAGCTCGCTCTCCAGAAGAACGGTTTCGCGCTTCCTCGTTACTCTGATTCATCCAAAGTCGCTTATGTTCTCCAAGGAACTGGAGTTGTTGGAATTGTACTCCCTGAATCAGAAGAGAAGGTTGTTGCAATCAAGAAAGGTGATGCCTTGGCGCTTCCCTTTGGTGTTGTGACATGGTGGTATAACAAGGAAGACACTGAGTTGGTTGTTCTGTTCCTGGGAGACACTTCAAAGGCTCACAAGGCTGGTGAGTTCACTGACTTTTATCTGACTGGTTCCAATGGAATCTTCACAGGCTTTTCAACTGAGTTTGTGGGGAGAGCTTGGGACTTGAAAGAGAATGAGGTCAAAACCCTTGTTGGAAATCAATCAGCCAAAGGCATTGTGAAGCTGGAAGGTAATATCACCATTCCTGAACCTAAACCCGATCATCGGGATGGCATGGCCTTGAACTGTCTAGAGGCTGCACTGGATGTTGACATCAAGGATGGTGGAAGGGTTGTGGTGTTGAACACCAAGAATCTTCCATTGGTTGGTGAGGTTGGACTCGGAGCTGACCTTGTGAGGTTGGATGGTGGAGCCATGTGTTCTCCAGGATTCTCTTGTGACTCTGCTTTGCAGGTTACTTATATTGTCAGGGGCAGTGGCAGGGTTCAGGTGGTTGGTGTTGATGGCAAGAGGGTTTTGGAGACAACTGTGAAAGCTGGTAATTTGTTCATTGTGCCTAGGTTTTATGTGGTCTCCAAGATTGCTGATCCTGAGGGATTGGAGTGGTTCTCTATCATCTCCACCCCCAATCCTATATTTACCCACTTGGCTGGAAGTTCTTCAGTGTGGAAGGCTTTGTCACCTACGGTTCTGCAGGCTGCATTCAATGTAGATTCAGGCGTTGAGCAACTCTTCCGTTCAAAGAGGACCGCTGATGCCATTTTCTTCCCTCCACCAAAGTAG 1071 0.4855 MAIDLSPQLAKKLYGGNGGSYHAWSPSELPMLREGNIGASKLALQKNGFALPRYSDSSKVAYVLQGTGVVGIVLPESEEKVVAIKKGDALALPFGVVTWWYNKEDTELVVLFLGDTSKAHKAGEFTDFYLTGSNGIFTGFSTEFVGRAWDLKENEVKTLVGNQSAKGIVKLEGNITIPEPKPDHRDGMALNCLEAALDVDIKDGGRVVVLNTKNLPLVGEVGLGADLVRLDGGAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGKRVLETTVKAGNLFIVPRFYVVSKIADPEGLEWFSIISTPNPIFTHLAGSSSVWKALSPTVLQAAFNVDSGVEQLFRSKRTADAIFFPPPK* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2815 356 CDD cupin_11S_legumin_N 4 173 - -
Lja3g2815 356 PANTHER OS03G0336100 PROTEIN-RELATED 3 347 - -
Lja3g2815 356 SMART Cupin_1_3 195 339 IPR006045 -
Lja3g2815 356 SMART Cupin_1_3 3 157 IPR006045 -
Lja3g2815 356 PANTHER - 3 347 - -
Lja3g2815 356 Pfam Cupin 12 157 IPR006045 -
Lja3g2815 356 Pfam Cupin 199 335 IPR006045 -
Lja3g2815 356 Gene3D Jelly Rolls 194 356 IPR014710 -
Lja3g2815 356 Gene3D Jelly Rolls 4 190 IPR014710 -
Lja3g2815 356 CDD cupin_11S_legumin_C 198 353 - -
Lja3g2815 356 SUPERFAMILY RmlC-like cupins 16 345 IPR011051 -
Lja3g2815 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Lja3g2815 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Lja3g2815 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Lja3g2815 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Lja3g2815 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2815 Lja-Chr3 42738863 42741056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2815 35 333 Miscellaneous Gene Families AT2G18540 23.496 7.46e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2815 - - gmx:100795038 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2815 3 42738863 42741056 Lja3g0755 3 7650253 7652100 PCT