Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2800 ATGGCTGCTCCACCGGCTAGGGCTCGTGCGGATTACGATTACCTCATAAAGCTTCTCTTGATTGGCGACAGTGGTGTTGGAAAGAGTTGTCTTCTTCTGCGTTTCTCCGATGGTTCTTTCACAACTAGTTTCATTACAACCATAGGCATTGACTTTAAGATAAGGACCATTGAGCTGGATGGAAAGCGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACTGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTTTATGATGTTACAGACGAATCTTCATTCAACAATATTAAGAATTGGATTCATAACATTGAGCAACATGCCTCAGACAATGTTAACAAGATACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAAAGGGCTGTGCCTACCTCCAAGGGCCAAGCACTTGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCGATTGCAAGAGATATAAAACAAAGGCTCGCTGACACAGACTCTTCTAAGACAGAGCCGACAGGAATTAAAATTAACCCACAAGATAAGGGATCTGCGGGAGAGGCTGCACAAAAGTCAGCTTGCTGTGGTTGA 648 0.4352 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSSKTEPTGIKINPQDKGSAGEAAQKSACCG* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2800 215 ProSiteProfiles small GTPase Rho family profile. 9 182 - -
Lja3g2800 215 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Lja3g2800 215 SMART rab_sub_5 16 180 - -
Lja3g2800 215 TIGRFAM small_GTP: small GTP-binding protein domain 14 170 IPR005225 GO:0005525
Lja3g2800 215 CDD Rab8_Rab10_Rab13_like 13 180 - -
Lja3g2800 215 MobiDBLite consensus disorder prediction 182 215 - -
Lja3g2800 215 PRINTS Transforming protein P21 ras signature 16 37 - -
Lja3g2800 215 PRINTS Transforming protein P21 ras signature 39 55 - -
Lja3g2800 215 PRINTS Transforming protein P21 ras signature 57 79 - -
Lja3g2800 215 PRINTS Transforming protein P21 ras signature 119 132 - -
Lja3g2800 215 PRINTS Transforming protein P21 ras signature 155 177 - -
Lja3g2800 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 186 IPR027417 -
Lja3g2800 215 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Lja3g2800 215 SMART ran_sub_2 21 215 - -
Lja3g2800 215 Gene3D - 9 214 IPR027417 -
Lja3g2800 215 PANTHER LD44762P 1 214 - -
Lja3g2800 215 ProSiteProfiles small GTPase Rab1 family profile. 11 214 - -
Lja3g2800 215 PANTHER BNAA07G37610D PROTEIN 1 214 - -
Lja3g2800 215 ProSiteProfiles small GTPase Ras family profile. 6 215 IPR001806 GO:0003924|GO:0005525
Lja3g2800 215 SMART arf_sub_2 1 181 - -
Lja3g2800 215 SMART ras_sub_4 17 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2800 Lja-Chr3 42343405 42347553 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2800 K07901 - csv:101211533 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2800 3 42343405 42347553 Lja3g2800 3 42343405 42347553 ECH
Lja3g0739 3 7512947 7516732 Lja3g2800 3 42343405 42347553 ECH
Lja3g2800 3 42343405 42347553 Lja3g0739 3 7512947 7516732 PCT