Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2653 ATGCTTGTTTATGGGGTGTCTGTATTGGAGCTAAATTGGCTTCTTGGGTTGCTTGGTTTGGCAAAAAAGAAAGCACCCAATATTTCTGATCAGAGCAGCAACACTAGTGACACTGAGCCGTGGTCCCTGCTGTTCATTTTGCTGGCAATTGTGGTTGGCCTTGGGTGGTTGCACTTTCATCAGTTGGATGAAAACAGAGAGCACAGTCCTAGTGTTAATGAGCAGGAGGAGCACAGCAGTGGTGAATCAAGTTCTAGCCATTATTTTGATGAGGATCCGCAGCTCCGTCCGCTGACCGCCACCCGTGGAGGCGCTGCAGGGAGACGTGGTGCTTGTACCTTGTGCGGCAATCTAAGCACCACAAGATGCTCACGCTGCAAGGTTGCAAGATATTGCTCAATGAATTGCCAAATTAGTCATTGGAGGTCAGGGCATCAATATGAGTGCTGTGAAATAGAGACTGAGGCGGATCAAGCAAGAGATGTCCATGATCATGGTTCTACTTCTATGCTTGTTGAGAAGCCTGAAATGGAGAGTATCTCTAATCCATCCCAAGGAGATGTAGTTGAGTCTTCAGATGTGTCCAGTGGCAGTGATGTCAACAAATTTCATGGTTGTGAAGTATGTGGTAGCTCAACTACCACAAAATGTCCACAATGCAAAGCCGTCAAATACTGCTCATTGAAGTGTTTGATTATGGATCGAAGATGGCATAAAAATCATTGCATTGCAATGGACGTGAATTCATCCCCAACAGAAACACCTGATAGAAATAATAGGGAAAGATATTTTGAGGAAGAAGCAACAAAGTCAAGGAATGAGATTTTTTGGCTTAGATCAGAGTGTGACAAGTGGAAAAAGAAAGCAAATTTGTCTAGAGAAACATTGCAAAGCTTCAAGGAAGAATCAGAACACCAGTTGTCTGTGTTGGAAAATGAAAAGGAATCAATGTTTAATGCTGAGAAGAAAGCTTGCAATATGATTCATAGTTTACAGGAGAGGCTAAACCATATGCAGATTAAAGTGCAAGAAAGCACTGCAGAGAAGATAAAGCTTGAAGAACATTTACAAACTTTAGAGAGTGAATGTGCTAAGCTGAAGACAAAATTTCAAGAAGAGCATAAACATGCTCAATATCTCAAAGTGCAGGCTGACAAGAATCATGAGGCTGGACGAATTGCCAAAGAAGAAGTTGAAGCCATTAGACAAGAGCTTCAAGAAGAGCGTGAACATGTCCTGCGTCTTAAAGAGGATTTTCTTAGAGATGTTGCATTTGCTGAATCTAGAGCTGATTTTGCTGAGGCAAAACTAAATGATCTTCGTAAGAAAATCAGGTTGACAGATTATAAGGTGAATATATTTTAA 1365 0.4161 MLVYGVSVLELNWLLGLLGLAKKKAPNISDQSSNTSDTEPWSLLFILLAIVVGLGWLHFHQLDENREHSPSVNEQEEHSSGESSSSHYFDEDPQLRPLTATRGGAAGRRGACTLCGNLSTTRCSRCKVARYCSMNCQISHWRSGHQYECCEIETEADQARDVHDHGSTSMLVEKPEMESISNPSQGDVVESSDVSSGSDVNKFHGCEVCGSSTTTKCPQCKAVKYCSLKCLIMDRRWHKNHCIAMDVNSSPTETPDRNNRERYFEEEATKSRNEIFWLRSECDKWKKKANLSRETLQSFKEESEHQLSVLENEKESMFNAEKKACNMIHSLQERLNHMQIKVQESTAEKIKLEEHLQTLESECAKLKTKFQEEHKHAQYLKVQADKNHEAGRIAKEEVEAIRQELQEEREHVLRLKEDFLRDVAFAESRADFAEAKLNDLRKKIRLTDYKVNIF* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2653 454 Coils Coil 328 376 - -
Lja3g2653 454 MobiDBLite consensus disorder prediction 67 107 - -
Lja3g2653 454 ProSiteProfiles Zinc finger MYND-type profile. 112 149 IPR002893 -
Lja3g2653 454 Coils Coil 391 443 - -
Lja3g2653 454 MobiDBLite consensus disorder prediction 67 85 - -
Lja3g2653 454 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 105 180 - -
Lja3g2653 454 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 202 396 - -
Lja3g2653 454 Gene3D - 102 154 - -
Lja3g2653 454 Gene3D - 193 247 - -
Lja3g2653 454 SUPERFAMILY HIT/MYND zinc finger-like 110 151 - -
Lja3g2653 454 Coils Coil 293 320 - -
Lja3g2653 454 Pfam MYND finger 112 149 IPR002893 -
Lja3g2653 454 Pfam MYND finger 206 242 IPR002893 -
Lja3g2653 454 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 105 180 - -
Lja3g2653 454 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 202 396 - -
Lja3g2653 454 ProSiteProfiles Zinc finger MYND-type profile. 206 242 IPR002893 -
Lja3g2653 454 MobiDBLite consensus disorder prediction 176 196 - -
Lja3g2653 454 SUPERFAMILY HIT/MYND zinc finger-like 202 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2653 Lja-Chr3 36623333 36626404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2653 112 149 Miscellaneous Gene Families AT4G31670 63.158 4.78e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2653 - K09291 lja:Lj0g3v0275539.3 871.307