Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2601 ATGGTACTTGCTGGTAAGCTTAGTACTGAAATTGGGATCAAAGCCCCTGCTGCCAAGTTCTACGACCTCTTCGCAAAGCAGCTTCACGATGTTCAAAACCACTGCGAGAGAGTGCATCACACCAAACTTCATGAGGGCGAGGACTGGCATGAAGTTGGTTCCGCGCTTAAACACTGGACTTATGTTATAGATGGCGAGGTACACACATGTCAGGAGCGCATTGAATCCGTTGATGAAGAGAACAAAACAATCAAATACAGCCTCTTCGATGGAGATATCGGTCAGCACTACAAGACCTTTCTGCTAACCCTTCAAGTGATTGAGAACAAAGATGGCCATGATACTGTTAAATGGACTGTTGAATATGAGATGCACCATGAGGAGAAAGAACCACCACATGGTTGGATGGAGTACGTGCATAAATGCACTAGAGATATTGATGCCAATCTTCTCAAGGCATAG 462 0.4502 MVLAGKLSTEIGIKAPAAKFYDLFAKQLHDVQNHCERVHHTKLHEGEDWHEVGSALKHWTYVIDGEVHTCQERIESVDEENKTIKYSLFDGDIGQHYKTFLLTLQVIENKDGHDTVKWTVEYEMHHEEKEPPHGWMEYVHKCTRDIDANLLKA* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2601 153 Pfam Pathogenesis-related protein Bet v 1 family 3 152 IPR000916 GO:0006952
Lja3g2601 153 CDD Bet_v1-like 5 132 - -
Lja3g2601 153 SMART Bet_v_1_2 2 153 IPR000916 GO:0006952
Lja3g2601 153 PANTHER MLP-LIKE PROTEIN 423 1 151 - -
Lja3g2601 153 PANTHER PATHOGENESIS-RELATED PROTEIN BET V I FAMILY PROTEIN 1 151 - -
Lja3g2601 153 Gene3D - 1 153 IPR023393 -
Lja3g2601 153 SUPERFAMILY Bet v1-like 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2601 Lja-Chr3 35474619 35477037 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2601 - - gmx:100794745 216.468