Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2599 ATGGTTACTGAAGGAACCAGAAAGCCTCAAGGTTCAGTACCTATATCACCTTGCAAAATCAATGTGCAGAAATATGCTAAATCACGTGGCCCGGAGCTCCTGAGCCTTCAATCTATCGTAGAAAATAGATTAAACAACAACTATAGCTCTCAAAGGAACAAGAGAAGAAGAACAACTGCATTTGATAGCCAAATTGCAAGAAAGGGGGGCAACAGAAAGAGGCAGAAACTGGGAGCAGTTGATAAAGCCCATGATGAATCAGTTTTGGAGAAGGACCGGTTAAAGAAGCTTCCTCGGCGTATTCGACGGAGATATGAACTTAAAATGAACCCAGAGAATGGTTTTTGCACTTCTGGGGATGGAACCAAGAGACTGAGAACTCATGTTTGGCATGCAAAGCGGTTTACCATGACGAAGCTGTGGGGTTACAACCTTCCTCTGGGTTTTCAAGGAAGAGGGAAAGGTTCAAGGGCAATCTTGAAAAGATTCAAAGAAGGTGTGCTTTTGCATGATGCTAGCTATTTTACTGCTGTCCAATTGGAGGGTCCAGAGGATTCGTTAGTTTCAGTATTAAGAATGGTACTGGTGCCTTCTCTGGAAACAGCAACGCCTGGGGATCATGATTTCTCTGTTCTTTCTGGTACAACCTATGGAACTGCAATGCTTTATCAAGTTGAAGCACCAGTTTCTCTGCCAATTGCTCCTGTGACCTATATATGGCGACCTACTTTCCCTCAAAATAAGAGTACTGAGCTAGATGGCAGAAATCATCATACTTCTTCAAGTCAACATGATATCAATGATGACTCAAGTAATCATGATGCTGATTTATGTGAAAAATCAGATGGGATGAAGTGTGGTTCTTCATTTAGACACATTTGGGTCTGGATACATGCTTCTGCATTTGAAGAAGGATATGATAGTCTAAAATTTGCCTGTCAGAAAGAGATGGAAAAGAGCGGCGTCCTAATTAATTGCTTATCACTTGAGGGCCAACTTGCCAAATTAGAATTGATGGGATCACAGACATTTAATCTTCTTCAGAAGATATTGCATCCTGTCCGCAGTATTTCAGAGAATCATTGGCAGTTAAAGAAACATGTGGCTATAGAAGAAGACTCTGTTTCTCCGAGTATAAAGTCATCCATACTGAATTGTGAGGAGCATTTTTCTTCTCATGCTATGTTATCTTTTAACGTTACGGATCCTCGAGAACTTCTGGGGAGAAGGACTATTACTCCAACAGAACCAATTTCAACTGAAGTACGGAGTGATGCTCAAGAAACTAATGACAACGAGCTTGCTAATTTTGGAGGAAAGTTTGAGAAGAATACAGGCTTATCTTCATTATCATGGTCAAAACATGTAGACAACCAGTCTAATGTCGATGATCTATGGTATGCTTCCACCACAGGGTTAAGGCCCCCAGTGGAAGACAGTGTCCTTTCTAAAGAGAAACACTGTGAGCGCATGGTTAATTTCTGCCTTGATGATAAAGAGTCTGGGGAGGCGAACTCCTCAACCAAGGTGCGGTGCTCAAGATCTTGCCCTATTGTGCTTTTAAAAAATGATATGAAGGATTTGATTATAGGATGGTCCATTATACTTCCCCTAAGTTGGGTCAAAGCCTTCTGGATTCCTCTTATTTCTAATGGGGCACATGCAATAGGTTTGCGAGAGAAGCACTGGATTGCGTGTGAAATAGAGCTACCATCTTTCCCTTCAGATTTCCCAGATTGCAAGGCATACTCATGCGAAATGGCAGCTAAAGATGCTGTATTTAATAAAAAAGAAGAACTACGTCAACCTTCCGTGAGGCATTTTAAAGTTCCCATCGTGCCACCTTGGGGCATTGTTCGCACTACTTTCAACAAAGAAATTAGTGCGATGGACACTCTTGATCTTTCGACTAGGGAAGATTTGACCAGTGCTAATTCATTGCCAATCTCTTGCTCAGGAAGCTCTAAAATTTCAAATTTTAACTGTGTGAATAATTCATTTGATGGAACTATAGCAAGAACAGGTAATATGCTGACTACTTTCATCAATGAAACCAAAGCTGGTCAATTGCTATTGTTTCCGCATGTAGCAGAAGGAAAGGACAAAATCTCCAAGTTCATTAAGGGAGAACAAAATCTGGATCTCATGCATAAGAGCTCTTGCATTTATGACCATAAGCTATGTTTTCTAAGAGTTATTCTTCACCCATTCAAGGAAGGCTTTTTTGAAGAGGGAGCAGTTATCTGTGCGCCATGTCCTTCTGATATATCTATATGGACTTCAAGTTCAGAGAAAAGCGAAAAAGATCTTCAACTGTCCCAGTCTGCTATGAGATTATACTTCAAAGAGCATTCCTCTGGTAATTGGGGAATGCAGATACCAGAGGATTCAATTGCCAGAGCGTCTCACCGATGGCCTATTGGCTTTGTCACAACAGCTTCAGTTCAAGGAAGCAAGAGGCTAGTAGCAGAGGGATTTTGCGAGGCAGTTTTACTGTCTCATTTAAGAGAGGAACAGTGGAAGGAGTTGCCTGTGAAACAAAGGAGGAGGGAAATATATGTACTTGTCCGGAATTTACGATCCGTAGCATATAGACTTGCTCTAGCTTCTGTTGTTCTGGAAAATCAAGAAAATGACGTTGAGTTCTTTTAA 2652 0.4118 MVTEGTRKPQGSVPISPCKINVQKYAKSRGPELLSLQSIVENRLNNNYSSQRNKRRRTTAFDSQIARKGGNRKRQKLGAVDKAHDESVLEKDRLKKLPRRIRRRYELKMNPENGFCTSGDGTKRLRTHVWHAKRFTMTKLWGYNLPLGFQGRGKGSRAILKRFKEGVLLHDASYFTAVQLEGPEDSLVSVLRMVLVPSLETATPGDHDFSVLSGTTYGTAMLYQVEAPVSLPIAPVTYIWRPTFPQNKSTELDGRNHHTSSSQHDINDDSSNHDADLCEKSDGMKCGSSFRHIWVWIHASAFEEGYDSLKFACQKEMEKSGVLINCLSLEGQLAKLELMGSQTFNLLQKILHPVRSISENHWQLKKHVAIEEDSVSPSIKSSILNCEEHFSSHAMLSFNVTDPRELLGRRTITPTEPISTEVRSDAQETNDNELANFGGKFEKNTGLSSLSWSKHVDNQSNVDDLWYASTTGLRPPVEDSVLSKEKHCERMVNFCLDDKESGEANSSTKVRCSRSCPIVLLKNDMKDLIIGWSIILPLSWVKAFWIPLISNGAHAIGLREKHWIACEIELPSFPSDFPDCKAYSCEMAAKDAVFNKKEELRQPSVRHFKVPIVPPWGIVRTTFNKEISAMDTLDLSTREDLTSANSLPISCSGSSKISNFNCVNNSFDGTIARTGNMLTTFINETKAGQLLLFPHVAEGKDKISKFIKGEQNLDLMHKSSCIYDHKLCFLRVILHPFKEGFFEEGAVICAPCPSDISIWTSSSEKSEKDLQLSQSAMRLYFKEHSSGNWGMQIPEDSIARASHRWPIGFVTTASVQGSKRLVAEGFCEAVLLSHLREEQWKELPVKQRRREIYVLVRNLRSVAYRLALASVVLENQENDVEFF* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2599 883 ProSitePatterns Neurotransmitter-gated ion-channels signature. 566 580 IPR018000 -
Lja3g2599 883 MobiDBLite consensus disorder prediction 251 273 - -
Lja3g2599 883 MobiDBLite consensus disorder prediction 249 273 - -
Lja3g2599 883 MobiDBLite consensus disorder prediction 414 438 - -
Lja3g2599 883 Pfam POPLD (NUC188) domain 531 604 IPR012590 -
Lja3g2599 883 Pfam Ribonucleases P/MRP protein subunit POP1 39 182 IPR009723 -
Lja3g2599 883 PANTHER RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1 16 871 IPR039182 GO:0000172|GO:0001682|GO:0005655
Lja3g2599 883 MobiDBLite consensus disorder prediction 414 434 - -
Lja3g2599 883 PANTHER RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1 16 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2599 Lja-Chr3 35276303 35282598 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2599 K01164 - gmx:100788705 1302.73