Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2436 ATGAGTCGAGGAAGTGGAGGCGGCTACGATCGCCACATCACCATCTTCTCCCCTGAAGGCCGTCTCTTCCAAGTTGAGTATGCTTTCAAGGCTGTTAAGGCGGCCGGGATAACGTCAATTGGTGTCCGTGGAAAGGATTCGATTTGTGTTGTTACTCAGAAGAAGGTTCCGGACAAGCTGCTGGATCAGACAAGTGTTTCACATCTCTTTCCCATTACAAAGTATCTTGGTTTATTGGCAACTGGCATGACAGCTGATGCTAGGACACTGGTTCAACAAGCAAGAAATGAAGCAGCTGAATTTCGGCACACATATGGATATGAGATGCCTGTGGACGTATTAGCTAAATGGATTGCTGATAAATCACAAGTCTATACTCAGCATGCTTATATGAGACCTCTTGGAGTAGTTGCTATGGTTTTGGGTATTGATGACGAAAATGGGGCTCAGCTTTACAAATGCGATCCTGCTGGCCATTACTTTGGTCACAAGGCCACAAGTGCTGGATTGAAGGACCAAGAGGCAATTAATTTCTTGGAAAAGAAGATGAAGAATGACCCTTCATTTACCTATGAGGAGACAGTTCAGACTGCCATTTCTGCCTTACAATCAGTTCTTCAGGAGGATTTTAAGGCCACTGAGATTGAGGTTGGAGTGGTGCGGAAGGATAATCCAGAATTCAGAGTTCTATCCACCGATGAGATTGATGAGCACTTGACTGCAATAAGCGAGCGTGATTGA 741 0.4507 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRHTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDENGAQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPEFRVLSTDEIDEHLTAISERD* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2436 246 ProSitePatterns Proteasome alpha-type subunits signature. 9 31 IPR000426 GO:0006511|GO:0019773
Lja3g2436 246 Pfam Proteasome subunit A N-terminal signature 9 31 IPR000426 GO:0006511|GO:0019773
Lja3g2436 246 SMART Proteasome_A_N_2 9 31 IPR000426 GO:0006511|GO:0019773
Lja3g2436 246 Pfam Proteasome subunit 36 220 IPR001353 GO:0005839|GO:0051603
Lja3g2436 246 CDD proteasome_alpha_type_6 8 220 IPR034642 GO:0019773
Lja3g2436 246 PANTHER PROTEASOME SUBUNIT ALPHA TYPE-6 1 243 - -
Lja3g2436 246 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 243 - -
Lja3g2436 246 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 246 IPR029055 -
Lja3g2436 246 ProSiteProfiles Proteasome alpha-type subunit profile. 24 239 IPR023332 -
Lja3g2436 246 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 8 245 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2436 Lja-Chr3 30096592 30102257 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2436 K02730 - gmx:732640 478.404