Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2304 ATGACGGGGGTTGAAGGCCCAAGCTACACTGTAGATGATGCTCTTCTGGCTTTGGGTTTTGGGAATTTCCAGATACTCGTGCTTGGTTATGCTGGCATTGGTTGGATTTCAGAAGCAATGGAGATGATGATGCTCTCTTTTGTTGGGCCTGCAGTGCAAACAGCATGGGGTCTTTCCTCTCATGAAGAGAGCTTCATAACCAGTGTGGTTTTTGGTGGCATGTTGATTGGGGCATACTCTTGGGGCATTGTTTCTGATAAACATGGAAGGAGGAAAGGATTCCTTATCACAGCAACAGTTACTGCTATAGCTGGATTTCTGAGTGCATTTGCTCCTAACTATATATTATTAATTGTCCTTCGTTCAGTGGTTGGTATTGGTTTGGGAGGTGGCCCTGTATTATCTTCTTGGTTTCTTGAGTTTGTTCCTGCCCCCAATAGAGGTACCTGGATGGTTGTCTTTTCAGGATTTTGGACTGTTGGTACAATTTTTGAGGCATCACTTGCATGGATTGTGATGCCAAGACTGGGTTGGAGATGGCTTCTTGCTCTATCTTCGCTTCCCACATCTTTCCTCCTTCTATTCTACAAAATGACGCCTGAGTCACCGAGATACCTGTGCTTGAAAGGTAGAACAGCTGATGCAATCAATATTTTGGAGAAAATAGCAAGAGTAAATGGAAGAAAACTTCCTTCTGGTACCCTTGTTTCTGACCATCAAATTGAGCTACACGAAATCGATAGCTCCTCAGAGGACATAGGTTTACTCTCGCCAAGAAAAAGTGAAGCTGAATCTCCTAAAGGAATTGTTTCCAACTTAGGCGGCATCTCATCACTGAAGATGCTTCTCTCACCAAATTTGGCGAGGTCAACCCTTCTATTATGGGCAGTGTTTTTTGGTAATGCTTTTTCATATTATGGCCTTGTTTTGTTGACGTCTGAGTTGAATGGACATAGTAAATGCGTGCCACATGAATTGCAGACAGAGAGTTCCCAGGATATTAGGTACAAAGATGTTTTCATTGCTAGCTTTGCAGAGGTACCTGGGCTCCTCTTGTCAGCTGCAGCAGTAGATAAACTTGGTCGTAAGCTTTCAATGTCAAGCATGTTCTTCATGTGTTGTATTTTCCTGCTCCCATTAGTATTCTATCTTCCTGAAGGCCTTACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCACGGCGACCTTCACAATTGTGTACATTTATGCACCAGAGATGTACCCAACATCAGTCAGAACAACTGGTGTGGGAATCGCAAGCTCGGTGGGAAGGATTGGTGGAATGTTATGTCCTTTGGTAGCAGTTGGTTTAGTACATAGCTGTCATCAAACTGCAGCTGTTCTTCTATTTGAATTTGTAGCTCTAGTTTCAGGAATATGTGTTATGCTCTTTCCGGTTGAGACCATGGGCCAAGAACTACGAGATAGTGTATCAAGCTGA 1464 0.4344 MTGVEGPSYTVDDALLALGFGNFQILVLGYAGIGWISEAMEMMMLSFVGPAVQTAWGLSSHEESFITSVVFGGMLIGAYSWGIVSDKHGRRKGFLITATVTAIAGFLSAFAPNYILLIVLRSVVGIGLGGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLLLFYKMTPESPRYLCLKGRTADAINILEKIARVNGRKLPSGTLVSDHQIELHEIDSSSEDIGLLSPRKSEAESPKGIVSNLGGISSLKMLLSPNLARSTLLLWAVFFGNAFSYYGLVLLTSELNGHSKCVPHELQTESSQDIRYKDVFIASFAEVPGLLLSAAAVDKLGRKLSMSSMFFMCCIFLLPLVFYLPEGLTTGLLFGARICITATFTIVYIYAPEMYPTSVRTTGVGIASSVGRIGGMLCPLVAVGLVHSCHQTAAVLLFEFVALVSGICVMLFPVETMGQELRDSVSS* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2304 487 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 5 486 - -
Lja3g2304 487 ProSitePatterns Sugar transport proteins signature 1. 353 368 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja3g2304 487 ProSiteProfiles Major facilitator superfamily (MFS) profile. 27 477 IPR020846 GO:0022857
Lja3g2304 487 Pfam Sugar (and other) transporter 59 226 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja3g2304 487 Pfam Sugar (and other) transporter 351 481 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja3g2304 487 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER-LIKE, MAJOR FACILITATOR SUPERFAMILY DOMAIN PROTEIN-RELATED 5 486 - -
Lja3g2304 487 SUPERFAMILY MFS general substrate transporter 17 482 IPR036259 -
Lja3g2304 487 Gene3D MFS general substrate transporter like domains 21 484 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2304 Lja-Chr3 27604369 27610484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2304 49 485 Organic Solute Cotransporters AT3G20660 26.049 4.75e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2304 - - gmx:100786568 840.491