Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2297 ATGTGGAAGCTGAAGGTAGCAGATGGTGGGAAAGACCCATACATATTCAGCACCAACAACTTCGTTGGGAGACAGACTTGGGAGTATGATCCTGATGCAGGGACTCCAGAGGAACGAGCTCAGGTTGAAGAAGCTCGTCAGGATTTCTATAACAACCGCTACAAGGTGAAACCATGTGGTGACCTGCTTTGGCGGTTTCAGGTCCTGAGGGAAAATAACTTCAAGCAAACAATACCGAGTGTGAAGATAGAAGATGGAGAGGAGATAACATATGAAAAAGCAACAACCACTCTGAAAAGGGCGGCACATCACCTAGCAGCATTGCAGACTAGTGATGGACATTGGCCTGCTCAAATTGCAGGTCCTCTGTTTTTCCAACCTCCATTGGTCTTTTGTATGTACATAACAGGACATCTTAATTCAGTATTTCCAGAAGAGTATCGCAAAGAGATTCTTCGTTACATATACGTTCACCAGAATGAAGATGGAGGGTGGGGACTACATATAGAGGGTCATAGCACCATGTTTTGTACTGCACTCAACTACATATGCATGCGAATGCTTGGAGAAGGGCCTGATGGAGGTCAAGACAATGCTTGTGCTAGAGCAAGAAAATGGATTCTTGATCATGGTGGTGTAACACACATACCTTCTTGGGGGAAGACATGGCTTTCGATACTTGGTATATTTGATTGGAAGGGAAGCAACCCTATGCCCCCTGAGTTTTGGATCCTTCCTTCATTTCTTCCTATGCATCCAGCTAAAATGTGGTGTTATTGCCGGCTGGTATACATGCCTATGTCTTACTTGTATGGGAAGAGGTTTGTGGGTCCAATAACACCACTCATCTTACAATTGAGAGAAGAACTATTTACTCAACCTTATGAGAAAGTTAATTGGAAGAAAGCTCGTCACCAATGTGCAAAGGAAGATATTTACTATCCCCATCCTTTGATACAAGACTTGATGTGGGATAGTTTATACCTATTCACTGAACCACTTCTGACTCGTTGGCCTTTCAACAAGCTGGTCAGAGAAAAAGCGCTTGAAGTAACAATGAAACATATCCACTACGAAGATGAGAATAGTCGATACATAACCATCGGGTGCGTGGAAAAGGTTTTATGCATGCTTGCTTGTTGGGTGGAAGATCCGAACGGAGATGCTTTCAAGAAGCATCTTGCTAGGGTCCCAGATTACTTATGGGTTTCAGAAGATGGAATGTGCATGCAGAGTTTTGGTAGCCAAGAATGGGATGCTGGTTTTGCAGTTCAAGCTTTGCTTGCCACTAACCTAGTTGACGAACTTGGTCCCACACTTGCCAAAGGACATGATTTCATCAAGAAATCTCAGGTTAGGGACAACCCTTCAGGAGATTTTAAGAATATGCATCGCCATATTTCCAAAGGGTCATGGACCTTTTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTGAAGTGTTGTCTACTTCTATCAATGTTGCCTCCAGATATTGTGGGGGAAAAGATGGAACCTGAATGTTTATTTGATTCTGTCAATCTCCTGTTATCACTTCAGAGTAAAAAGGGTGGTTTGGCAGCATGGGAGCCAGCAGGAGCTCAAGAATGGTTGGAACTACTCAACCCCACCGAATTTTTCGCGGATATTGTAGTTGAGCATGAATATGTTGAGTGCACTGGATCTGCAATTGGAGCCTTAGTTTTGTTCAAGAAGCTATATCCAGGGCATAGAAAGAAAGAAATTGAGAATTTCATTTCCGAAGCGGTTCGATTCCTAGAAGATACACAAACTGCCGATGGTTCTTGGTATGGAAACTGGGGAGTTTGCTTCACTTACGGTTCTTGGTTCGCGCTTGGTGGTCTTGCAGCAGCTGGCAAGACTTATGCCAATTGTGCTGCCATTCGCAAAGCTGTTAAATTTCTACTCACTACACAAAGAGGTGATGGCGGGTGGGGAGAGAGCTATTTGTCTAGCCCAAAAAAGATATATGTACCATTTGAAGGAAACCGATCAAATGTTGTACATACAGCATGGGCTCTTATGGGTTTAATTCATTCTGGCCAGGCTGAGAGAGACCCTACTCCACTTCATCGTGCTGCAAAATTGCTCATCAATTCTCAGCTTGAAGAGGGTGATTGGCCCCAACAGGAAATCACTGGAGTATTCATGAAAAATTGTATGCTGCATTATCCAATGTACAGAGATATTTATCCCATGTGGGCTCTAGCTGAATATCGTAGACGGGTTCCATTGCCTTCCACTGCAGTTTAA 2289 0.436 MWKLKVADGGKDPYIFSTNNFVGRQTWEYDPDAGTPEERAQVEEARQDFYNNRYKVKPCGDLLWRFQVLRENNFKQTIPSVKIEDGEEITYEKATTTLKRAAHHLAALQTSDGHWPAQIAGPLFFQPPLVFCMYITGHLNSVFPEEYRKEILRYIYVHQNEDGGWGLHIEGHSTMFCTALNYICMRMLGEGPDGGQDNACARARKWILDHGGVTHIPSWGKTWLSILGIFDWKGSNPMPPEFWILPSFLPMHPAKMWCYCRLVYMPMSYLYGKRFVGPITPLILQLREELFTQPYEKVNWKKARHQCAKEDIYYPHPLIQDLMWDSLYLFTEPLLTRWPFNKLVREKALEVTMKHIHYEDENSRYITIGCVEKVLCMLACWVEDPNGDAFKKHLARVPDYLWVSEDGMCMQSFGSQEWDAGFAVQALLATNLVDELGPTLAKGHDFIKKSQVRDNPSGDFKNMHRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSMLPPDIVGEKMEPECLFDSVNLLLSLQSKKGGLAAWEPAGAQEWLELLNPTEFFADIVVEHEYVECTGSAIGALVLFKKLYPGHRKKEIENFISEAVRFLEDTQTADGSWYGNWGVCFTYGSWFALGGLAAAGKTYANCAAIRKAVKFLLTTQRGDGGWGESYLSSPKKIYVPFEGNRSNVVHTAWALMGLIHSGQAERDPTPLHRAAKLLINSQLEEGDWPQQEITGVFMKNCMLHYPMYRDIYPMWALAEYRRRVPLPSTAV* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2297 762 Gene3D - 119 414 - -
Lja3g2297 762 Pfam Squalene-hopene cyclase C-terminal domain 418 753 IPR032696 -
Lja3g2297 762 TIGRFAM squalene_cyclas: squalene/oxidosqualene cyclases 97 753 IPR018333 GO:0005811|GO:0016104|GO:0016866
Lja3g2297 762 PANTHER TERPENE CYCLASE/MUTASE FAMILY MEMBER 1 756 IPR018333 GO:0005811|GO:0016104|GO:0016866
Lja3g2297 762 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 121 410 IPR008930 -
Lja3g2297 762 PANTHER LUPEOL SYNTHASE 1 1 756 - -
Lja3g2297 762 ProSitePatterns Terpene synthases signature. 605 619 IPR002365 GO:0016866
Lja3g2297 762 CDD SQCY_1 98 751 IPR018333 GO:0005811|GO:0016104|GO:0016866
Lja3g2297 762 Pfam Squalene-hopene cyclase N-terminal domain 99 402 IPR032697 -
Lja3g2297 762 SFLD Prenyltransferase Like 2 25 754 IPR018333 GO:0005811|GO:0016104|GO:0016866
Lja3g2297 762 Gene3D - 503 722 - -
Lja3g2297 762 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 351 756 IPR008930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2297 Lja-Chr3 27525452 27534345 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2297 K15813 - ag:BAA89815 1528.07