Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2292 ATGTGGATGACGACAATGTCAATTAGGAGCAGCGGTTTGTTATGGTTTCGAATCAATTGCTGCGATTCCAAAACAGGACGTGGTTTTGGAGAAAACAGGATTAAGACCAACAAAGCTGACAAGGGTTCGGTGTCGCCGCAAAGGGGATCAACATCGAAACAGTCTCGGTCTGTGCCTTCTCAGGCACCCCTTTTAAGTTCACAAGTTGACAGGAAACTTAGAAACAGTTCTTTGGATGTTGACTTCGAGGAACGCCTAAAAGAAGTTAGAAGGTCAGCGATTGAGCAAAAGAAGGCAGAGGATAAAAAAGAATTTGGAGCAATTGACTATGATGAACCAATTTCTTCAGACAAAAAAACAATTGGCTTGGGTACCAAGGTTGGTGTAGGTGTTGCTGCTGTGGTTTTCGGTCTGGTTTTTGCTTTTGGGGATTTTCTTCCATCAGGAAGTGTTAGTCCCAACGAAGACAGCGCTGTGGTCAAAAGTAAATTGTCAGAGGAGGATAAAGCTGCTCTTGAGAGTAGGCTTAAGGAATTTGAAGCGACATTAAGTAACTCCCCAAGAGATCCAACCGCTCTTGAAGGATCTGCAGTAACTCTGGCTGAACTAGGGGAATACACAAGAGCTGCTTCTCTACTTGATGATTTGACAAAGGAAAAACCAAATGATGCTGATGTTTTTCGCTTGCTTGGAGAAGTTAAGTACGAACTCAAAGATTATGAAGGGAGTGTTGCTGCATATAAAAATTCAGCAAAGGTGTCTGAAGATATCAAATTTGAAGTTTTGCGTGGCCTCACCAATTCATTGCTTGCTGCCAAGAAGCCAGATGAGGCTGTTCAATTACTTTTAGCATGTCGTGAGCGTCTCAGTTCCGAAAACTTGAGCCAAAAATCTGATAGCAGCCCAACAGACTCACAGAAGTTGGATCCAATCCAAGTTGATTTACTTCTAGGTAAAGCCTACTCAGATTGGGGCCATGTGGGTGATGCAGTAGCTGTTTATGATCGACTTATATCTGCTCACCCTGATGATTTCCGTGGATACCTAGCTAAGGGAATCATCCTAAAAGAAAACAAAAACATTGGAGATGCTGAGAGGATGTTCATACAAGCTAGGTTCTTTGCACCAGACAACGCTAAAGCACTTGTAGACCGTTATTCACGATAA 1167 0.4276 MWMTTMSIRSSGLLWFRINCCDSKTGRGFGENRIKTNKADKGSVSPQRGSTSKQSRSVPSQAPLLSSQVDRKLRNSSLDVDFEERLKEVRRSAIEQKKAEDKKEFGAIDYDEPISSDKKTIGLGTKVGVGVAAVVFGLVFAFGDFLPSGSVSPNEDSAVVKSKLSEEDKAALESRLKEFEATLSNSPRDPTALEGSAVTLAELGEYTRAASLLDDLTKEKPNDADVFRLLGEVKYELKDYEGSVAAYKNSAKVSEDIKFEVLRGLTNSLLAAKKPDEAVQLLLACRERLSSENLSQKSDSSPTDSQKLDPIQVDLLLGKAYSDWGHVGDAVAVYDRLISAHPDDFRGYLAKGIILKENKNIGDAERMFIQARFFAPDNAKALVDRYSR* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2292 388 MobiDBLite consensus disorder prediction 27 66 - -
Lja3g2292 388 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 9 388 - -
Lja3g2292 388 Pfam Tetratricopeptide repeat 316 365 - -
Lja3g2292 388 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 9 388 - -
Lja3g2292 388 Coils Coil 162 182 - -
Lja3g2292 388 Pfam Tetratricopeptide repeat 176 231 - -
Lja3g2292 388 Gene3D Tetratricopeptide repeat domain 152 386 IPR011990 GO:0005515
Lja3g2292 388 MobiDBLite consensus disorder prediction 39 66 - -
Lja3g2292 388 SUPERFAMILY TPR-like 179 381 IPR011990 GO:0005515
Lja3g2292 388 SMART tpr_5 224 257 IPR019734 GO:0005515
Lja3g2292 388 SMART tpr_5 259 292 IPR019734 GO:0005515
Lja3g2292 388 SMART tpr_5 311 344 IPR019734 GO:0005515
Lja3g2292 388 SMART tpr_5 345 378 IPR019734 GO:0005515
Lja3g2292 388 ProSiteProfiles TPR repeat profile. 311 344 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2292 - - gmx:100777868 592.038