Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2288 ATGTGGTCGAAAACAAAAACCTCTGCTTCAATCTCTCGCTCTCAGGAACCAAAAATGGCATTGGAATCTCAATCGCAGAAGAAGAAGAACAATTTGCATCATCATGGGCATGGGCAAGGGGTTTTCGGAGATGTATTCAGCATCATGAAAGAGATTGAAATGGACCTGGATTTAAGATTTCAATTACCTCACCTTGCACTTCCCCCAGATTTCTTGGGTAGCAGAGAAGTTCGTGAGTTTATTAGTGGGGCTCTAGCTGGGGCTATGACAAAAGCTATACTTGCTCCTCTTGAGACTATCAGGACAAGAATGATAGTTGGTGTTGGGTCGAGAAATATCACCGGTAGTTTCGCTCAGGTTATAGAGCAGCAGGGGTGGCAAGGATTGTGGACTGGAAACATGATCAATATGATTCGTATAGTTCCAACACAAGCCATTGAGCTTAGCACATTTGAGTGTGTAAAACGGGCAATGACCTCAGTGCAAGAGAAGTGGAAGCAGAATGAAGGCCCTAAGTTGCAGATTGGTTTCATCAATTTGAACTTATCTTTATCTTGGATTTCACCAGCTGCTGTGGGTGGAGCAGCTGCAGGAGTTTCTAGTACACTTGTATGCCATCCCCTGGAAGTTTTGAAGGATCGGCTCACTGTAAATCCTGAAGCCTACCCTAATTTAGGCATTGCAATTAGAAATATTTATAAAGCCGGTGGTGTTGGCGCTTTTTATGCCGGTCTTGCGCCCACTCTAGTTGGCATGCTTCCATACAGCACATGTTATTACTTTATGTATGAGACGATAAAGAAATCTTACTGCCAGACCAAAAATAAGAAGTCGTTAAATCGTCCAGAAATGCTTTTAGTTGGAGCTCTTGCAGGTTTAACTGCCAGTACAATTAGCTTCCCATTGGAGGTGGCTAGGAAGCGCCTGATGGTGGGAGCTTTGCAAGGTAAGTGCCCGCCAAACATGGCGGCAGCACTTTCAGACGTAGTTCGAGAAGAAGGTCTGAAGGGTCTCTACAGAGGATGGGGTGCAAGCTGTTTAAAGGTTATGCCATCCTCTGGCATTACATGGATGTTTTATGAAGCATGGAAAGACTTGTTGCTTGCTCAGAAGGGTAATTCCTTGTAG 1128 0.4441 MWSKTKTSASISRSQEPKMALESQSQKKKNNLHHHGHGQGVFGDVFSIMKEIEMDLDLRFQLPHLALPPDFLGSREVREFISGALAGAMTKAILAPLETIRTRMIVGVGSRNITGSFAQVIEQQGWQGLWTGNMINMIRIVPTQAIELSTFECVKRAMTSVQEKWKQNEGPKLQIGFINLNLSLSWISPAAVGGAAAGVSSTLVCHPLEVLKDRLTVNPEAYPNLGIAIRNIYKAGGVGAFYAGLAPTLVGMLPYSTCYYFMYETIKKSYCQTKNKKSLNRPEMLLVGALAGLTASTISFPLEVARKRLMVGALQGKCPPNMAAALSDVVREEGLKGLYRGWGASCLKVMPSSGITWMFYEAWKDLLLAQKGNSL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2288 375 Pfam Mitochondrial carrier protein 77 159 IPR018108 -
Lja3g2288 375 Pfam Mitochondrial carrier protein 191 271 IPR018108 -
Lja3g2288 375 Pfam Mitochondrial carrier protein 283 368 IPR018108 -
Lja3g2288 375 SUPERFAMILY Mitochondrial carrier 77 361 IPR023395 -
Lja3g2288 375 PRINTS Mitochondrial carrier protein signature 92 106 IPR002067 GO:0055085
Lja3g2288 375 PRINTS Mitochondrial carrier protein signature 79 92 IPR002067 GO:0055085
Lja3g2288 375 PRINTS Mitochondrial carrier protein signature 288 310 IPR002067 GO:0055085
Lja3g2288 375 PRINTS Mitochondrial carrier protein signature 132 152 IPR002067 GO:0055085
Lja3g2288 375 PRINTS Mitochondrial carrier protein signature 242 260 IPR002067 GO:0055085
Lja3g2288 375 ProSiteProfiles Solute carrier (Solcar) repeat profile. 74 157 IPR018108 -
Lja3g2288 375 MobiDBLite consensus disorder prediction 1 36 - -
Lja3g2288 375 ProSiteProfiles Solute carrier (Solcar) repeat profile. 185 269 IPR018108 -
Lja3g2288 375 PANTHER SOLUTE CARRIER FAMILY 25 48 372 - -
Lja3g2288 375 MobiDBLite consensus disorder prediction 1 26 - -
Lja3g2288 375 Gene3D Mitochondrial carrier domain 74 371 IPR023395 -
Lja3g2288 375 PANTHER MITOCHONDRIAL ADENINE NUCLEOTIDE TRANSPORTER BTL1-RELATED 48 372 - -
Lja3g2288 375 ProSiteProfiles Solute carrier (Solcar) repeat profile. 279 366 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2288 Lja-Chr3 27407859 27410912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2288 56 375 Organic Solute Cotransporters AT3G20240 72.274 4.05e-175 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2288 - - gmx:100777341 583.178