Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2280 ATGGCTACAGTCGGAGTAGAATTGAACCACGCGGCGGAGGCGGCACCGGAGGAGAATTGCTCCGCCAAACCTACCAAACAGGGCGAGGGTCTCCGTCACTACTACTCTCTCCACATCCATGAACTTCAGCTCCTCCTCCGCCAGAAAACCCATAACCTCAACCGTCTCGAGGCTCAGAGAAACGAGCTCAATTCTCGAGTGAGGATGCTCCGAGAAGAACTGCAGCTTCTACAGGAGCCTGGCTCATATGTTGGTGAAGTTGTTAAAGTTATGGGCAAGAACAAAGTTTTGGTCAAGGTCCATCCAGAAGGGAAATATGTTGTTGATATTGATAAGAACATTGACATTACAAAGATTACACCATCAACTAGGGTTGCGCTCCGCAATGACAGTTATGTGCTTCATTTAGTTCTGCCCAGCAAAGTTGATCCATTGGTCAATCTGATGAAAGTTGAGAAAGTTCCTGATTCTACATATGATATGATTGGTGGTTTAGACCAGCAAATCAAAGAAATAAAAGAGGTCATTGAGCTACCAATTAAACATCCTGAGCTGTTTGAAAGTCTTGGAATAGCACAACCGAAGGGTGTTCTGCTCTATGGGCCACCTGGTACAGGAAAAACATTGTTGGCTAGGGCAGTTGCACACCATACTGATTGTACATTCATCAGGGTGTCTGGATCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTCGTTATGGCAAGGGAGCATGCACCATCAATTATCTTCATGGACGAAATTGACAGTATCGGATCTGCTCGGATGGAGTCTGGAAGTGGCAATGGTGATAGTGAAGTGCAACGTACTATGTTGGAACTTCTCAACCAGTTGGATGGATTTGAAGCTTCAAATAAGATCAAGGTTTTGATGGCCACGAATCGGATTGATATCCTGGATCAAGCACTCCTTAGACCTGGACGAATTGATAGAAAGATTGAATTTCCAAACCCTAATGAAGAGTCTCGGCAGGATATTTTGAAAATCCATTCTAGAAGAATGAATTTAATGCGCGGTATTGATTTGAAGAAGATTGCTGAGAAGATGAATGGCGCATCTGGCGCAGAGCTTAAGGCTGTGTGCACAGAAGCTGGAATGTTTGCTCTAAGAGAGAGGAGGGTTCATGTGACGCAGGAGGACTTTGAGATGGCCGTGGCAAAGGTCATGAAAAAGGAGACGGAGAAAAACATGTCATTGCGGAAGTTGTGGAAATGA 1257 0.4455 MATVGVELNHAAEAAPEENCSAKPTKQGEGLRHYYSLHIHELQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKNIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRQDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2280 418 Gene3D - 336 413 - -
Lja3g2280 418 Pfam ATPase family associated with various cellular activities (AAA) 197 330 IPR003959 GO:0005524|GO:0016887
Lja3g2280 418 Pfam AAA+ lid domain 354 396 IPR041569 -
Lja3g2280 418 Coils Coil 39 73 - -
Lja3g2280 418 Pfam Proteasomal ATPase OB C-terminal domain 84 139 IPR032501 -
Lja3g2280 418 PANTHER BNAA02G04630D PROTEIN 24 415 IPR035261 GO:0036402
Lja3g2280 418 Gene3D - 150 331 IPR027417 -
Lja3g2280 418 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 41 403 IPR005937 GO:0005737|GO:0030163|GO:0036402
Lja3g2280 418 CDD AAA 163 330 - -
Lja3g2280 418 SMART AAA_5 193 333 IPR003593 -
Lja3g2280 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 407 IPR027417 -
Lja3g2280 418 ProSitePatterns AAA-protein family signature. 301 319 IPR003960 GO:0005524|GO:0016887
Lja3g2280 418 Gene3D - 45 149 IPR012340 -
Lja3g2280 418 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 24 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2280 Lja-Chr3 27350172 27355341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2280 158 414 Miscellaneous Gene Families AT5G58870 40.541 3.06e-56 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2280 K03066 - gmx:100812783 785.408