Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2264 ATGAGTGTTCATGGCGTCATCCCTCAGCTTCATCTCCTTGTCTTCCACACGTTCCACCTTCTCCTACTTCACCATGAAAATGCAGACCCGACCTACCTCAAGATGGTAGCCAACGCGAGCTCGTTTCCGCCGGAAGACTACTACGACTACATCATCATCGGCGGCGGCACAGCGGGGTGCCCACTGGCAGCAACACTGTCACGAGTCTCTCGCGTTCTGCTTCTTGAACGAGGAGCCATCGGCCACGGAAACCCAAATCTCATGACCCAAGAAGGCTTCTTGAGCACGCTGTTAATCTCCAACGTCAACGACGACCACTCCCCGGCGCAACCCTTCACCTCCGAGGAGGGCATCAACAACGCCCGCGGCCGCGTCCTCGGCGGCAGCAGCGCCATCAATGCCGGATTCTACAGCAGAGCCGACGCCGATTTCTTCAACAAATCTGGGTTGAGCTGGGACATGAGGCTCGTCAACGAGTCCTACGAGTGGGTCGAGAGGGAAATCGTGTTCACGCCGCACCTCCGGACGTGGCAATCGGCGGTTCGTGATGGGTTGCTGGAAGCAGGGGTGGGTCCCTTCAATGGCTTCACCGTCGACCACGCCACCGGGACCAAGATCGGTGGCTCCACCTTCGATTCCGCCGGAACAAGACACACCGCCGCTGATCTTCTGAATTACGCGAAACCCTCCAATCTCAAGGTGGCGGTGCACGCCACCGTCGAGAGGGTGCTTCTTGCTGCCTCAACCCTTGATTCAAATTCTGCGATTGGGGTTCTTTACCGTGACGAATTGGGGGGGTATCACCACGCGATTCTGCGGGAACGCGGTGAGGTGATTCTTGCTGCTGGTGCGATTGGGAGTCCTCAGCTTCTTCTTCTCAGTGGGATTGGGCCGAGATCTTACCTTTCTTCATGGGGGATTCCGGTGGCGCATCATCTTCCCTATGTTGGGCATTTCCTCTATGACAATCCTCGCAATGGAATCACTATTCTCCCTTCAGTTCCATTGGAGCATTCTCTCATACAGGTGGTGGGCATAACGGATTCTGGTTCTTACATCGAAGCAGCATCGAATGTGGTTCCGTTTCTTGCTTCTCCTCCCCATTCGGTCTTCATTCGCACCCCTGCGCCGCCGCTTTACCTCACCGTGGCCACCCTCATGTCGAAGATTTCAGGGCCTGCTTCTTCTGGTTTTCTCAGACTGGCTTCCACTGATGTCAGGTTTAACCCCATTGTGAGGTTTAATTACTTCAACAACCCGGTTGATGTCGAGCGCTGCGTGAATGGGACTAGGAAGATTGGGGATGTTCTCAGGAGCAGGGCTATGAATGATTTCAAGTTCAGGAACCGGTTGGGGGTGAGGGATTTCAGGTTTGTTGGACCTGCATTGCCGCGTGACCAGAGGGACTATGGTCAGATGGCTAATTTCTGCCGCCGGACGGTGAGCACCATATGGCATTACCATGGGGGCTGTGTTGTGGGCAGGGTGGTTGATCCTCAGCTTAGGGTCATTGGAATTGATTCACTTCGGGTTGTGGATGGTTCAGTGTTTAGTGTGTCGCCGGGAACCAATCCTCAGGCCACCATCATGATGCTTGGAAGGTATTTTGGGATCAAGATAAACAGAGAAAGAGGTAGATACCAATGA 1647 0.5452 MSVHGVIPQLHLLVFHTFHLLLLHHENADPTYLKMVANASSFPPEDYYDYIIIGGGTAGCPLAATLSRVSRVLLLERGAIGHGNPNLMTQEGFLSTLLISNVNDDHSPAQPFTSEEGINNARGRVLGGSSAINAGFYSRADADFFNKSGLSWDMRLVNESYEWVEREIVFTPHLRTWQSAVRDGLLEAGVGPFNGFTVDHATGTKIGGSTFDSAGTRHTAADLLNYAKPSNLKVAVHATVERVLLAASTLDSNSAIGVLYRDELGGYHHAILRERGEVILAAGAIGSPQLLLLSGIGPRSYLSSWGIPVAHHLPYVGHFLYDNPRNGITILPSVPLEHSLIQVVGITDSGSYIEAASNVVPFLASPPHSVFIRTPAPPLYLTVATLMSKISGPASSGFLRLASTDVRFNPIVRFNYFNNPVDVERCVNGTRKIGDVLRSRAMNDFKFRNRLGVRDFRFVGPALPRDQRDYGQMANFCRRTVSTIWHYHGGCVVGRVVDPQLRVIGIDSLRVVDGSVFSVSPGTNPQATIMMLGRYFGIKINRERGRYQ* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2264 548 Pfam GMC oxidoreductase 393 534 IPR007867 GO:0016614
Lja3g2264 548 SUPERFAMILY FAD/NAD(P)-binding domain 45 541 IPR036188 -
Lja3g2264 548 PANTHER (R)-MANDELONITRILE LYASE-LIKE 29 546 - -
Lja3g2264 548 Gene3D - 170 483 - -
Lja3g2264 548 PIRSF Alcohol_oxidase 355 548 IPR012132 GO:0050660
Lja3g2264 548 PIRSF Alcohol_oxidase 22 358 IPR012132 GO:0050660
Lja3g2264 548 Gene3D - 48 533 IPR036188 -
Lja3g2264 548 ProSitePatterns GMC oxidoreductases signature 1. 123 146 IPR000172 GO:0016614|GO:0050660
Lja3g2264 548 Pfam GMC oxidoreductase 48 323 IPR000172 GO:0016614|GO:0050660
Lja3g2264 548 ProSitePatterns GMC oxidoreductases signature 2. 283 297 IPR000172 GO:0016614|GO:0050660
Lja3g2264 548 PANTHER OSJNBA0019K04.7 PROTEIN 29 546 - -
Lja3g2264 548 SUPERFAMILY FAD-linked reductases, C-terminal domain 320 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2264 Lja-Chr3 27114103 27117306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2264 9 547 Miscellaneous Gene Families AT5G51950 45.439 4.47e-149 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2264 K08248 - gmx:100820069 796.193