Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2196 ATGCAGCAAGATTCACCGAAAGCCGAATCGATCCAGATTCGCGAGGTGTGGAACGAAAATCTGGAGCAAGAGTTCGCCTTGATCCGTGAAATCGTCGATGACTACCCTTACATCGCCATGGACACCGAGTTCCCCGGAATCGTTCTCCGCCCGGTGGGGAATTTCAAGAACAGCCATGATTACCATTACCAAACCCTAAAGGACAACGTCGACATGCTCAAGCTTATCCAACTCGGCTTAACGTTCTCCGACGAGGAGGGTAACCTCCCCTCCTGCGACGGCTCCTCCTGCATCTGGCAGTTCAACTTTCGCGAGTTCAATGTCAATGAGGACGTCTTCGCGAATGACTCGATCGAGCTATTGCGGCAGAGTGGGATTGATTTCAGCAAGAATAACGAGATGGGCATCGACGCCCGACGATTCGGGGAGCTTTTGATGTCGTCGGGGATTGTGTTGAATGATAATATCCACTGGGTTACGTTTCATAGTGGGTATGATTTTGGGTATTTGTTGAAGTTATTGACTTGTCAGGACCTGCCTGATACTCAGGTAGGGTTCTTTAACATGATCAACATGTACTTCCCTACATTGTATGACATCAAGCATCTCATGAAGTTTTGCAACAGTCTTCATGGTGGGTTGAACAAGCTTGCAGAGTTGTTGGAGGTGGAGAGGGTTGGGATTAGTCATCAGGCTGGTTCTGATAGCTTGCTCACTTCTTGTACATTCAGGAAATTGAAAGAGAATTTCTTTAGTGGCTCTTTGGAAAAATATGCTGGTATCTTGTATGGATTAGGTTGTGAGAATGGACATGGTTCTCATTGA 825 0.4691 MQQDSPKAESIQIREVWNENLEQEFALIREIVDDYPYIAMDTEFPGIVLRPVGNFKNSHDYHYQTLKDNVDMLKLIQLGLTFSDEEGNLPSCDGSSCIWQFNFREFNVNEDVFANDSIELLRQSGIDFSKNNEMGIDARRFGELLMSSGIVLNDNIHWVTFHSGYDFGYLLKLLTCQDLPDTQVGFFNMINMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVGISHQAGSDSLLTSCTFRKLKENFFSGSLEKYAGILYGLGCENGHGSH* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2196 274 Pfam CAF1 family ribonuclease 16 136 IPR006941 -
Lja3g2196 274 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 6 272 IPR039637 GO:0004535|GO:0030014
Lja3g2196 274 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 6-RELATED 6 272 - -
Lja3g2196 274 Gene3D - 2 268 IPR036397 GO:0003676
Lja3g2196 274 SUPERFAMILY Ribonuclease H-like 13 265 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2196 Lja-Chr3 26006503 26008030 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2196 K12581 - gmx:100789409 514.612