Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2183 ATGTCAGTGAAAGATTTCCCTGAAGAATGCTGGGAATTAGTCTTCAGATTCCTCAGCCACACTCATGATTTGGAGTCTCTATCTCTTGTCTGCAAGCAATTCCTTTCCATCACAAACCACCTTCAATCCTCTCTCAAAATCTATGACAAAACCATCCTCCTCCTTCCTAATCTATTCTCAAGATTCTCAAGGCTCAAAACCATAGACCTCAGCAACTTCAATGGTGACCTCAAGGTCTTACTCCATCAAATTTCTCAATCTGGATTGGACCTTGATTCGCTCAATCTTTCCAATCAGAGAACAATTCCCATTGATGGGTTGAGAGAGCTTGGTTCAAAGATGAAAAATTTTAAGGTTTTGACCTGCTCCAACATTGGTTCTCTGCAAGATGGCCACCTTGTGGTCATAGCTTATTGTTTCCCATTTCTTGAAGAGCTTGACATAAGCTTTCCATTGGATTCTCAAGCATCTGATTTTGGGATACTAAGGCTTGCTTCATTGCTTGAGAATCTTCGCAAGATTAACCTCTCTGGTAATCACTTAATCACTGATAAATCTCTTTTCTCTCTGTGCCAAAACTGTACTTCAATGGAGCAAATCTCATTCTTCACATGTTTCAAGATAACCCAAGTTGGCATTGCTTCTGCAATTCGCCTCAGACCAAGTTTGAGTTCAATCTCTTTCAATATTGAAAAGAAAAGAATTCATGGACCTGGTTTGACACCTTTACCTATCAACCTTGATTTGATTGATTCATTCAAGAGTTTGAAAAGATTAACTGCTGTTGATTTGTCAAACTCTTTTATCTCGGATGAGTTTCTAGTTTCAATTGCTGAGGGAAGTGGAGGTGGTAATCTGCTGAATAAGCTCATCCTCCAAGACTGTTGCAACTGCACATTTGAAGGAATCAATTGTTTGTTATCCAAATGTCAATCTGTTCAGTACTTGGATCTTAGTAAAGCTGATTTTCTAACAGACCAATGTATCAGTAAATTGTCTGTGTTTCTTCATAGTTTAACCTCTATTAACCTTAGTGGTTGCTGCCAGCTGACAAATTCTACTTTTTTCACACTCACAAGAAACTGTCCTTTGATCAGTGAGATCAACATGGAGAGAACATATCTGGGGGTAGAAGGGGAAGAAGATTCCCATTCCATGCTGGATTTTGTTGTCAATGTACAAGTGAGAAAAGTTTATCTGGGTGATAATGTTTTACTGAGAGATGCAAGTTTGATAAAATTTGCTTCAATTTGCCCCAATTTGCAGCTTCTTGACTTAAATGCTTGTGAGGGTGTCTCTGGAGGGTGTATTGTGGAGGTTTTGAAGAAATGCTGTGACATGAGGCATTTAAACCTGGCCTATACAGGAATTAAAGAGTTAGAGATAGACTTTGTAGTTTCACAATTGGAGATTCTGAACTTGTCAGGGTCAAGCATTGAGGATGAAGCACTTTCAATGATCTCAAGGAGGTTTCCTGGACTATTACTTCTGGACATTCAGAATTGCTGGTGTGTGACAGCCAAAGGGGTGAGGGAAGTAGTGGAAAACTGCAGAGCAATGAAAGAGTTGAATTTGAAAAATTGTGATTTGGTGGATGATGATTTTGTTGTTGGGGTGAAGAGTTCAAGCCCATCATTGAGAACAATAATCACACCTTCTGGTGTTGGTGTTTATTACTGA 1680 0.3917 MSVKDFPEECWELVFRFLSHTHDLESLSLVCKQFLSITNHLQSSLKIYDKTILLLPNLFSRFSRLKTIDLSNFNGDLKVLLHQISQSGLDLDSLNLSNQRTIPIDGLRELGSKMKNFKVLTCSNIGSLQDGHLVVIAYCFPFLEELDISFPLDSQASDFGILRLASLLENLRKINLSGNHLITDKSLFSLCQNCTSMEQISFFTCFKITQVGIASAIRLRPSLSSISFNIEKKRIHGPGLTPLPINLDLIDSFKSLKRLTAVDLSNSFISDEFLVSIAEGSGGGNLLNKLILQDCCNCTFEGINCLLSKCQSVQYLDLSKADFLTDQCISKLSVFLHSLTSINLSGCCQLTNSTFFTLTRNCPLISEINMERTYLGVEGEEDSHSMLDFVVNVQVRKVYLGDNVLLRDASLIKFASICPNLQLLDLNACEGVSGGCIVEVLKKCCDMRHLNLAYTGIKELEIDFVVSQLEILNLSGSSIEDEALSMISRRFPGLLLLDIQNCWCVTAKGVREVVENCRAMKELNLKNCDLVDDDFVVGVKSSSPSLRTIITPSGVGVYY* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2183 559 SMART LRR_CC_2 418 443 IPR006553 -
Lja3g2183 559 SMART LRR_CC_2 256 280 IPR006553 -
Lja3g2183 559 SMART LRR_CC_2 466 490 IPR006553 -
Lja3g2183 559 SMART LRR_CC_2 168 193 IPR006553 -
Lja3g2183 559 SMART LRR_CC_2 88 113 IPR006553 -
Lja3g2183 559 SMART LRR_CC_2 310 335 IPR006553 -
Lja3g2183 559 SMART LRR_CC_2 517 545 IPR006553 -
Lja3g2183 559 SMART LRR_CC_2 336 361 IPR006553 -
Lja3g2183 559 SMART LRR_CC_2 491 516 IPR006553 -
Lja3g2183 559 PANTHER NODULIN-LIKE PROTEIN 243 543 - -
Lja3g2183 559 PANTHER UNCHARACTERIZED 243 543 - -
Lja3g2183 559 Gene3D Ribonuclease Inhibitor 461 551 IPR032675 -
Lja3g2183 559 Gene3D Ribonuclease Inhibitor 382 460 IPR032675 -
Lja3g2183 559 ProSiteProfiles F-box domain profile. 1 51 IPR001810 GO:0005515
Lja3g2183 559 Gene3D Ribonuclease Inhibitor 1 239 IPR032675 -
Lja3g2183 559 Gene3D Ribonuclease Inhibitor 240 377 IPR032675 -
Lja3g2183 559 SUPERFAMILY RNI-like 17 226 - -
Lja3g2183 559 Pfam Leucine Rich repeat 170 191 IPR001611 GO:0005515
Lja3g2183 559 PANTHER NODULIN-LIKE PROTEIN 5 322 - -
Lja3g2183 559 Pfam F-box domain 5 40 IPR001810 GO:0005515
Lja3g2183 559 PANTHER UNCHARACTERIZED 5 322 - -
Lja3g2183 559 SUPERFAMILY RNI-like 250 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2183 Lja-Chr3 25784132 25786260 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2183 K10268 - gmx:100811565 835.869