Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2172 ATGTCTTCTCTCAGTAGGGAACTGGTGTTCTTGATCTTGCAGTTTCTGGATGAGGAAAAGTTCAAAGAGACAGTTCACAAGCTTGAGCAAGAGTCTGGGTTTTTCTTCAACATGAAGTATTTTGAGGATGAAGTGCATAATGGGAATTGGGAAGAGGTTGAGAAATACCTCTCTGGATTCACAAAAGTAGATGATAATAGGTATTCCATGAAGATATTTTTCGAGATAAGGAAACAGAAGTATCTGGAGGCATTAGACAAGCATGACCGGTCCAAGGCTGTTGAAATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTCAATGAAGAACTGTTCAAGGAAATCACCCAGCTCTTGACATTGGAGAATTTTAGGGAAAATGAACAATTATCAAAGTATGGTGATACAAAGTCTGCACGAGCAATCATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCAAATCCCTTGTTCCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCGAGGTTACGGACTCTGATCAATCAAAGCTTGAATTGGCAGCATCAACTTTGCAAGAATCCACGTCCAAATCCTGATATAAAAACTCTCTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGAGCTCCTTCACCTGCTAATAGCCCGCTACTAGGGTCCTTACCCAAAGCTGGAGGATTTCCTCCTCTTGGTGCACACGGGCCTTTTCAACCTACTCCAGCACAAGTGCCAACACCCCTGGCTGGTTGGATGTCAAATCCTACCCCTGTAACACATGCTGCAGTTTCTGGAGGAGGAGGTATAGGTCTTGGTGCTCCATCAATCCCTGCTGTTTTGAAGCATCCTAGGACCCCTCCAACTAATCCCTCTGTCGACTATCCGTCTGGAGATTCTGATCATGTTGCTAAGAGACCAAGGCCAATGGGAATTTCAGATGAGGTAAATCTACCTGTGAATGTGTTGTCAGCATCATTCTCGGGTCATGGTCATGGTCATGGTCAGGCTTTTAGTGCACCTGATGATTTACCAAAGACTGTCGTGCGAACTCTGAACCAGGGTTCAACTCCTATGAGCATGGACTTTCATCCAGTTCAACAAACTTTGCTTCTTGTTGGTACGAATGTGGGGGACATTGCTTTATGGGAAGTCGGTTCAAGGGATAGGTTGGTCTCAAGGAACTTCAAAGTTTGGGATCTAAGTGCATGTTCAATGACGTTTCAGGCTGCTCTTGTCAAAGATCCTGGTGTTTCTGTTAACCGAGTGATTTGGAGTCCTGATGGTGCTTTATTTGGGGTTGCTTACTCTAGGCACATTGTTCAGATATACTCTTACCATGGTGGGGATGAAGTGCGACAACATCTGGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTTGCATTTTCCCACCCAAATAAGCAACTATGTGTGATAACCTGTGGTGATGATAAGACCATTAAGGTGTGGGATGCAGCTTCAGGTGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCAGTTTATTCTGTCTGCCCACATTACAAAGAGAACATTCAGTTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGATCTCGCGTTGATTATGATGCTCCTGGTCGATGGTGCACAACCATGGCTTACAGTGCTGATGGTACAAGGCTCTTTTCATGTGGAACAAGCAAAGAGGGGGAATCCTCTATTGTGGAGTGGAACGAAAGTGAAGGAGCTGTAAAAAGGACTTATCAAGGATTCCGTAAGCGATCTATGGGTGTTGTGCAATTTGATACTACCAAAAACCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAGTTTTGGGATATGGACAATGTTCAGCTTTTGACTACTGTTGATGCTGATGGGGGTCTCGCTGCAAGCCCACGTATTCGTTTCAACAAGGACGGAACTCTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGAGATGGTAATCGTTTATTGCGTACATTAGAGAATTCTATATATGATGCATCAAGAACATCAGAAGCCTTGGCAAAGCCTACAATAAATCCAATTTCTGCTGCGGCTGCGGCTGCAACTAGTGCTGCACTTGCAGAGAGAGCCTCATCTGTAGTAGCTATTACTGGAATGAATGGGGATCCCCGAAACTTGGGCGACGTTAAACCTAGAATAAGCGAAGAATCCAATGACAAGTCAAAAATATGGAAGCTCACTGAAATTAATGAACCATCTCAATGCAGAACCTTGAAGCTAGTGGAGAATCCTAGAGTAAACAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTAGCATTAGCATCGAATGCCATTCACCTGCTCTGGAAATGGCAGCGAACTGACCGCAGCTCATCTGGCAAGGCCAATGCCACCGTGCAACCTCAGTTGTGGCAACCATCAAGTGGCATCCTGATGACTAATGACATTGCTGATGGCAATCCGGAGGAAGCTTTAGCCTGTTTTGCTCTGTCCAAAAATGATTCATATGTAATGTCTGCATCAGGAGGGAAGGTATCCTTGTTCAATATGATGACGTTTAAGACAATGACTACTTTCATGCCTCCGCCGCCTGCAGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGATTCCTCTATTCAGATATATAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATACAAAGAAAATAACTGGTCTTGCTTTCTCACATGTATTGAATGTTCTAGTTTCATCTGGGGCTGATAATCAGATTTGTGTGTGGAATACTAATGGATGGGAGAAACAAAAGACTAGGTTCTTGCAGCTTCCGCACGGGAGGACTCCACCAGCACAATCTGATACTCGTGTACAGTTTCATCAGGATCAGATACACTTCTTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTGGAAGGACTAAAGCAGTGGTTCCCACAAGATTCTGCGGCACCAATATCGCATGCAACTTTCTCATGTGATAGCCAGCTGATATACGCCAGCTTTTTAGACGCAACAATCTGTGTATTTAGTGCTTCAAATCTCAGATTACGCTGCCGTATCAATCCTTCTGCTTATCTCCCATCAAGTGTCAGTTCCAACGTGCAACCACTTGTAATCGCCGCACATCCGCAAGAACCGAATCAGTTTGCTACAGGACTGTCAGATGGTACCGTTCATGTGTTTGAGCCCCTCGAGTCTGACGGCAAGTGGGGTGTGCCTCCTCCGATTGAGAATGGTTCAGCAAGCAATGTGGCAGCTGCTTCAGGTGGACCTTCTTCGGAACAAGCTCAAAGATGA 3408 0.4357 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPFQPTPAQVPTPLAGWMSNPTPVTHAAVSGGGGIGLGAPSIPAVLKHPRTPPTNPSVDYPSGDSDHVAKRPRPMGISDEVNLPVNVLSASFSGHGHGHGQAFSAPDDLPKTVVRTLNQGSTPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRDRLVSRNFKVWDLSACSMTFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRKRSMGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLAASPRIRFNKDGTLLAVSANENGIKILANGDGNRLLRTLENSIYDASRTSEALAKPTINPISAAAAAATSAALAERASSVVAITGMNGDPRNLGDVKPRISEESNDKSKIWKLTEINEPSQCRTLKLVENPRVNKISRLIYTNSGNAILALASNAIHLLWKWQRTDRSSSGKANATVQPQLWQPSSGILMTNDIADGNPEEALACFALSKNDSYVMSASGGKVSLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKKITGLAFSHVLNVLVSSGADNQICVWNTNGWEKQKTRFLQLPHGRTPPAQSDTRVQFHQDQIHFLVVHETQLAIYEATKLEGLKQWFPQDSAAPISHATFSCDSQLIYASFLDATICVFSASNLRLRCRINPSAYLPSSVSSNVQPLVIAAHPQEPNQFATGLSDGTVHVFEPLESDGKWGVPPPIENGSASNVAAASGGPSSEQAQR* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2172 1135 SMART ctlh 34 92 IPR006595 -
Lja3g2172 1135 Gene3D - 740 968 IPR015943 GO:0005515
Lja3g2172 1135 SMART Lish 4 36 IPR006594 GO:0005515
Lja3g2172 1135 SMART WD40_4 452 493 IPR001680 GO:0005515
Lja3g2172 1135 SMART WD40_4 496 537 IPR001680 GO:0005515
Lja3g2172 1135 SMART WD40_4 586 626 IPR001680 GO:0005515
Lja3g2172 1135 SMART WD40_4 832 869 IPR001680 GO:0005515
Lja3g2172 1135 SMART WD40_4 915 954 IPR001680 GO:0005515
Lja3g2172 1135 SMART WD40_4 402 446 IPR001680 GO:0005515
Lja3g2172 1135 SMART WD40_4 1060 1099 IPR001680 GO:0005515
Lja3g2172 1135 SMART WD40_4 1007 1047 IPR001680 GO:0005515
Lja3g2172 1135 SMART WD40_4 872 912 IPR001680 GO:0005515
Lja3g2172 1135 SMART WD40_4 346 385 IPR001680 GO:0005515
Lja3g2172 1135 SMART WD40_4 540 583 IPR001680 GO:0005515
Lja3g2172 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 922 963 IPR001680 GO:0005515
Lja3g2172 1135 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 1135 - -
Lja3g2172 1135 Gene3D - 321 548 IPR015943 GO:0005515
Lja3g2172 1135 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Lja3g2172 1135 MobiDBLite consensus disorder prediction 1103 1135 - -
Lja3g2172 1135 ProSitePatterns Trp-Asp (WD) repeats signature. 480 494 IPR019775 -
Lja3g2172 1135 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Lja3g2172 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 635 IPR001680 GO:0005515
Lja3g2172 1135 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1135 IPR027728 GO:0006355
Lja3g2172 1135 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 474 959 IPR011047 -
Lja3g2172 1135 MobiDBLite consensus disorder prediction 1118 1135 - -
Lja3g2172 1135 Pfam WD domain, G-beta repeat 921 954 IPR001680 GO:0005515
Lja3g2172 1135 Pfam WD domain, G-beta repeat 459 493 IPR001680 GO:0005515
Lja3g2172 1135 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 502 IPR001680 GO:0005515
Lja3g2172 1135 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 922 954 - -
Lja3g2172 1135 Gene3D - 1011 1135 IPR015943 GO:0005515
Lja3g2172 1135 Gene3D - 549 696 IPR015943 GO:0005515
Lja3g2172 1135 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 765 1101 IPR011047 -
Lja3g2172 1135 SUPERFAMILY WD40 repeat-like 346 536 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2172 Lja-Chr3 25509711 25517994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2172 457 670 Miscellaneous Gene Families AT5G08390 23.744 8.31e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2172 - - gmx:100782671 2112.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2172 3 25509711 25517994 Lja3g2172 3 25509711 25517994 ECH