Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2171 ATGGGTGGTGCGTGTTCTAGGAAGCAAGAGAGGGATAGTGAGGAAAGTTTCGGTAGAGGGTTTTCACGAAGATATTGCAAATGTGGGAGTTTGAAGTGGTGGACATCCTCATTTTCTTATCCATCTGGGGATTTGCACTTACAAAAAGGAGAATGTCCATTGCTGTTGCACTTGTGCATCCAGAAAATAAATGAGGATATTGATAAATATAACACATTTTCTATGCTCCCACGGGATATAAGTCAGCAAATTTTTAATAATTTGGTTTACTCCCAACGTCTAACGGATGTTTCCCTTGAAGCTTTTCGAGATTGTGCTCTCCAGGATCTTTACTTGGGAGAATATGACGGTGTTAATGATTCTTGGATGGATGTCATCTCATCTCAGGGTGAATCCTTACTTTCTGTAGATCTTTCTGGGTCTGATGTCACTGATTTTGGGCTGACGTACCTTCAAGATTGTCCAAGTCTCATGTCCTTACACCTAAATTACTGTGACCAAATTTCAGATCATGGACTGCAGTCTATCAGTGGTCTGTTAAACTTGACAAGTTTGAGTCTTAGAAGAAATGATTCAATATCTGCTCAAGGAATGAGTACCTTTTCTGGTCTTGTGAACTTGGTCAAGTTGGATTTGGAGAGATGTCCTAGGATTCATGGAGGCCTTGTTCATCTTCAAGGTTTAACCAAGTTGGAATCTCTCAATATAAAGTGGTGTAATTGCATAACAGACTCTGATATGAAGCCTCTATCAGAGCTTGCAAGCTTGACAAGCCTAGAGATTTCTTGCAGTAAAGTCACTGATTTTGGCATCACTTTTCTAAAAGGATTAAAAAAGCTTGCCCTATTAAATTTGGAAGGGTGCCTTGTAACAGCTGCCTGCTTGGATTCTCTCGCAGAGCTTCCTTCACTTTCAAACTTGAATCTTAATAGATGTGCTCTTTCTGATGATGGATGTGAAAAGTTTTCAAGACTGGAAAATTTGAAAGTATTAAACTTGGGATTTAGTGACATAGGAGATACCTGTTTAGCTCACTTGAAAGGATTGACTAAGTTGGAGAGCTTGAACCTTGATTCGTGTAAGATTGGTGACGAAGGATTGGTGAACTTGGCAGGCCATAAGCAATTGATCTGCTTGGAATTGTCTGATACAGAAGTTGGAAACAATGGCCTAGAACATTTATCAGGATTGTCTAGTCTGGAGAAAATAAATCTGTCATTCACCGTGATAAGTGATAGTGGTTTAAGGAAATTGCGTGGACTCTCATCTCTGAAGTCACTTAATTTGGATGCCTACCAAATTACTGATGTTGGACTGGCAACCCTTACAAGTTTGACTGGCCTCACTGACCTCGATTTGTTTGGCGCAAGAATTACAGATTTGGGGACAAACTATTTGAAAAAATTTAAGAATCTGAGGTCCTTGGAAATATGTGGTGGAGGATTGACTGATTCTGGTGTGAAAAATATCAAAGATCTTTCTTCTCTAACATGCTTAAATTTATCACAAAACAGCAACCTTACGGACAAAACCCTGGAGTTAATTTCTGGGCTTACTGGGTTGATTTCTTTGAATGTTTCAAATTCTCGAATCACCAATGCTGGACTGCGGCATTTGAAAACGCTCAAGAACTTGAGATCTCTGACATTGGAGTCCTGTAAGGTGACAGCAAATGACATTAAGAAACTTAAATCAACATACCTCCCTAATCTGGCATGCTTTCGGCCTGAGTAG 1734 0.3968 MGGACSRKQERDSEESFGRGFSRRYCKCGSLKWWTSSFSYPSGDLHLQKGECPLLLHLCIQKINEDIDKYNTFSMLPRDISQQIFNNLVYSQRLTDVSLEAFRDCALQDLYLGEYDGVNDSWMDVISSQGESLLSVDLSGSDVTDFGLTYLQDCPSLMSLHLNYCDQISDHGLQSISGLLNLTSLSLRRNDSISAQGMSTFSGLVNLVKLDLERCPRIHGGLVHLQGLTKLESLNIKWCNCITDSDMKPLSELASLTSLEISCSKVTDFGITFLKGLKKLALLNLEGCLVTAACLDSLAELPSLSNLNLNRCALSDDGCEKFSRLENLKVLNLGFSDIGDTCLAHLKGLTKLESLNLDSCKIGDEGLVNLAGHKQLICLELSDTEVGNNGLEHLSGLSSLEKINLSFTVISDSGLRKLRGLSSLKSLNLDAYQITDVGLATLTSLTGLTDLDLFGARITDLGTNYLKKFKNLRSLEICGGGLTDSGVKNIKDLSSLTCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLRHLKTLKNLRSLTLESCKVTANDIKKLKSTYLPNLACFRPE* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2171 577 Gene3D Ribonuclease Inhibitor 299 372 IPR032675 -
Lja3g2171 577 SUPERFAMILY RNI-like 273 566 - -
Lja3g2171 577 SUPERFAMILY L domain-like 127 333 - -
Lja3g2171 577 Gene3D Ribonuclease Inhibitor 373 478 IPR032675 -
Lja3g2171 577 PANTHER LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED RECEPTOR 4-LIKE 2 534 - -
Lja3g2171 577 SMART LRR_CC_2 349 373 IPR006553 -
Lja3g2171 577 SMART LRR_CC_2 542 566 IPR006553 -
Lja3g2171 577 SMART LRR_CC_2 301 325 IPR006553 -
Lja3g2171 577 SMART LRR_CC_2 228 253 IPR006553 -
Lja3g2171 577 SMART LRR_CC_2 493 518 IPR006553 -
Lja3g2171 577 SMART LRR_CC_2 421 445 IPR006553 -
Lja3g2171 577 SMART LRR_CC_2 180 204 IPR006553 -
Lja3g2171 577 SMART LRR_CC_2 154 179 IPR006553 -
Lja3g2171 577 Pfam Leucine Rich repeat 181 201 IPR001611 GO:0005515
Lja3g2171 577 Pfam Leucine Rich repeat 229 251 IPR001611 GO:0005515
Lja3g2171 577 Pfam Leucine Rich repeat 398 418 IPR001611 GO:0005515
Lja3g2171 577 Pfam Leucine Rich repeat 154 177 IPR001611 GO:0005515
Lja3g2171 577 Pfam Leucine Rich repeat 350 371 IPR001611 GO:0005515
Lja3g2171 577 Pfam Leucine Rich repeat 302 323 IPR001611 GO:0005515
Lja3g2171 577 PANTHER UNCHARACTERIZED 2 534 - -
Lja3g2171 577 Gene3D Ribonuclease Inhibitor 123 218 IPR032675 -
Lja3g2171 577 Gene3D Ribonuclease Inhibitor 219 291 IPR032675 -
Lja3g2171 577 Gene3D Ribonuclease Inhibitor 479 573 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2171 Lja-Chr3 25469611 25480715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2171 223 429 Receptor kinase-like Gene Family AT1G75820 27.488 2.33e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2171 - - gmx:100795219 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2171 3 25469611 25480715 Lja3g2171 3 25469611 25480715 ECH