Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2163 ATGGCCCCAAAATCAGGGAAAGGGAAATCAAATAAAGCTAAGGCAGAGAAGAAGAAAAAAGATGAGAAAGCAGTTGCACCTTCTCTTGTTGACATCACTGTGGTCACTCCTAATGATACCCAGCTTGTATTGAAGGGTATCTCTACTGATAAGATACTTGATGTAAGGAGGTTGTTGGCTGTAAAGACAGAGACATGCCATTTCACAAATTATTCTTTATCTCACGAGGTTAAAGGGCAGAGATTAAATGACAGAGTGGAAGTTGTTACCCTAAAGCCATGTCTTGTAACAATGGTTGAAGAGGATTACACAGAGGAAACCGATGCAATTGCACACGTGCGAAGGCTCTTGGACATTGTGGCCTGCACAACCAGGTCCGCAAAGCCCAAACGAAGCCCGTCAAACGCAGACTCAAAGCCTAAGAAAAACGGAAAAGCCCACAAGACCATTACGAGCCCACCCGCAACACCCAATGGAGAATCCCGGGTCGGGTCACCGTCGTCGGAACCGCCGGCATCGCCGATCTCGGACAACGTCGGCATGGTGGCCATTCACCCAACGCCGAAGCTCTCAGATTTCTACGAATTCTTCTCGTTCTCTCATGTCTCTCCCCCGATTTTACATTTGAAGAGATGTGAACTGAAGGAGGAAGATGATAGACGCAAAGGAGATTATTTTCAGCTTCAGGTGAAAATCTGCAATGGGAAGGTAGTGGAAGTGGTTGCTTCAGAGAAAGGGTTTTACAGTGTGGGAAAGTTGTCTCTGCAGAGCCGCACTTTGGTTGATCTTCTGCAACAGCTCAGCAGAGGTTTTGCTAATGCATATGGATTGTTGATGAAAGCTTTCTTGGAACGTAATAAGTTTGGCAATCTTCCATATGGATTCCGATCAAACACATGGCTTGTCCCTCCATCTGTTGCTGAGTCTCCTTCAACCTTTCCAGCTCTACCTGCTGAAGATGAAAACTGGGGTGGTAATGGTGGTGGCCAAGGAAGAAATGGTGAATACAATCTGAGACCATGGGCAACAGATTTTGCAATATTGGCTTCTCTTCCTTGCAAAACTGAGGAGGAGAGGGTGGTCAGAGATAGAAAAGCTTTTTTGCTTCACAGTCAGTTTGTTGATACCTCTATTTTTAAGGCGGTTGCGGCCATACAGCATGTCTTGGACTCCAGGCCAAATATGAAGGATGAAATGAATTCTTCTCCGGGTTCAATTCTGCATGAAGATCAAGTTGGGGACTTATTGGTCTTGGTCAAGCGCGATATCCGAGGTGGAACTAAAAAGTTTGAATCTTCACAGAAGGAATCCAGTACACATAAGGAGAATGCTAAGAAAAATTTAATTAAAGGGTTGACTGCAGATGAAAGTGTCGTCGTTAATGATACTTCTTCTTTGGCTGTGGTTGTTGTACACCATTGTGGATACACAGCAACAATAAAGGTTGTGGGCAATGCGAACGTGAGGATGCTTCAAGAAATTGAAATAGATGACCAGCCAGATGGAGGAGCAAATGCTCTTAACATCAACAGTTTGAGGCTACTGCTTCACAAGTCTGGAACTGAGTCATCAGAAGGGACTTCATCGTCGCTATCAAATTTGGATGACTTAGATTCTTCCAACTATCTTGTTCATAAGGTTGTTCAAGAATGCATGGAGAAGATAAAGGAGGAGCCTAGTGTTTCAAAAAGCTCTATTCGATGGGAACTTGGTTCTTGTTGGGTGCAGCATCTTCAAAAACAGGAAAACTCTACAGATAACAATTCTGAAAACAAAGAAGATAGCAAAGAAGTTGAAGCTGTTAAAGGTCTTGGAAAGCAATTTAAACTTTTGAAAAGGAGAGAAAAGAAACCAAGTAGTTTGGATGGTCCAGATTCTATGGAGGAAAATGATTCTACACCTGGAAATGTGAATGTAGGTGCTGATAAAGTTGAGCCAAACAAAGATGAGTCAAGTAGCTCTAATGAATTGGAGAAGCTACTTTCTAAAGATGCATTTTCACGTCTCAAGGAATCTGGAACTGGTCTTCATATGAAGTCAGTAGATGAGCTTATCAACATGGCACACAAGTTTTATGATGAAATTGCCTTGCCGAAGCTGGCTACGGACTTTGGATCACTTGAACTTTCTCCTGTGGACGGTCGCACACTTACTGACTTTATGCATTTAAGAGGTTTACAGATGCGATCTTTGGGTGAAGTGGTTAAACTTGCAGAGAATCTTCCACACATACAATCCCTTTGTATTCATGAGATGATTACTCGTGCTTTCAAGCATCTTCTTAAAGCAATTATCGCATCTGTTGACAATAAAGCAAACTTACCTTCAGTCATTGCATCGGCTCTGAATTTTGCACTTGGAGGGTGTCCAGTGGAAGATACCGACCAAACTTTGGGTGGTGATCATCATCTTAAAATTCAGTGGTTACGTATATTTTTGTCCAAAAGATTTGGATGGACATTGAATGATGAATTTAAACACTTGAGAAAGTTATCAATTCTCAGAGGGCTCTGTCACAAGGTTGGATTGGAATTGGTCCCAAGAGATTATGACATGGAATCCCCCAAGCCTTTTGGAAAATATGATATTATCAGTCTGGTTCCCATTTGCAAGCATGTAGGGTGCTCCTCTGTAGATGGACGCAATTTATTGGAATCTTCCAAAATTGCTCTAGATAAAGGAAAGCTTGAGGATGCTGTAAACTATGGAACAAAAGCATTAGCAAAGATGATGGCTGTTTGTGGTCCTTATCATCGAAATACTGCAAGTGCATATAGTCTTCTAGCTGTGGTTCTCTACCACACAGGAGATTTCAACCAGGCCACCATTTATCAACAAAAGGCCTTGGATATAAATGAGAGGGAGCTTGGGCTTGACCATCCTGATACAATGAAAAGCTACGGGGATCTTTCTGTTTTCTACTATCGCCTGCAACACATTGAGCTGGCTCTGAAGTACGTTAATCGTGCTCTATTCCTCCTTCATTTTACGTGTGGGCTGTCACATCCAAATACAGCTGCAACATATATAAATGTGGCTATGATGGAAGAGGGCATAGGAAATGTCAATGTGGCCCTTAGGTACTTGCATGAAGCTCTTAAATGCAACAAAAGATTGTTAGGAGCTGATCATATACAGACTGCTGCAAGCTATCATGCTATAGCTATAGCTCTTTCCTTGATGGAAGCATATTCTCTGAGTGTGCAACATGAGCAAACTACATTAAAGATACTTCAATCAAAGCTTGGGTCAGAAGATCTTCGTACACAGGATGCTGCTGCATGGCTTGAATATTTTGAATCAAAAGCCTTGGAGCAGCAAGAAGCAGCTAAAAATGGAACTCCAAAGGCAGATACATCTATCGCAAGTAAAGGTCACCTTAGTGTGTCAGATCTCCTGGATTTTATAAGTCCTGACAGAGTGTCAAAAGCCAATGATTCTCAGAAGAAAAGGCGTGCAAAGATAGTTCCAGTAAGTGATAACAACTGTGAAGAACATGTTGATACAGTAGCTGATGAGGACATTCTTTTTGATAATTCAAATGATGCTAAAACTACGGGAGAAGGGAATATAGAAGAAAAAAATGGCACACGTGATTCAGAAGAACTTAAAGAAAATGGTGATCTCACAAGGTACACACCGGTGACAAGTGAAGTTGTTTATGAGACATCATCAGATGAAGGTTGGAAAGAAGCCAGTTCAAAAGGACGTTCAGCAAATGCTGCGAACCGCAAGTTTGCACGCAGACAACGACCTCATCTATCAAAGCTCAGCATCAACGGTTCTGATAGGGGAATCAGTTATAGGAATGACATTGCTTCACCGCTGGAAAAAGGAGCTCCAAAAGTTATTGCAGGCATGTCATCTCCGTCTAGACAATCAAAAGCTCGAAACCTATCTTTGAAGGAGGACTCTGTTAATAAACAGACAAAAGCTCTTCTGTCCAAAAATTCCTCGGCTCCAGCTTCTGTAAGTCCTTTGGCTTCAAAGTCTGTATCTTACAAAGAAGTGGCTGTGGCACCGCCAGGAACAGTCTTAAAGCCATTGTTGGAAAAAGGTGAGATAGAGAGGGTAAGTGCTGAAAATGAGATATGCAGCAGTTCATCTGTGATGCCATTAAATGAAGGCTCCAGCCAAAGTTCCATCATTAATCCAGTTTCCCAGGAAGACAAATCAGAGGGAACTTGTGAAATTGAATCTCAACAAGAAAATTCTGAACCGGAGCTTGAGACAGTTTCCCTTGCATCTGATAAGGCAAAACTGGCTGAAGCAAATTGTAGTAAGCTTTCAGCTGCTGCCAAACCGTTCAATCCCGGAACACTGTCCTTGTCGCACCAGTTAAATTCAGCATCCTTCACAACCATTTATGACGCAAATGTTAGCCAAGCCGTGCTTGTGGAGCCTGTGCTCCCCCCTGCAGCTGCCAGGGTTCCTTGTGGGCCTAGATCACCTCTATATTACAGAACCAACTACGCTTTCCGCATGAAACATGGTTCTACAAAATTCCATACTGTCAGGGAAAGAAGTGGATTTGGGGCTCCAAGAATTATGAATCCTCATGCACCTGAATTTGTTCCTAGAGGTGCGTCTCAAACAGAGACTGGTGATTCTGAAAAAAATAAGCTAGATGATAGTTCTCCAAAAAAGAGCATATCTGAATCTGAGAAGTCAGAGATAGCAAGGCAAATATTGCTCAGTTTTCTAGTAAAATCTGTTCACCAAAATATTGATTCAACGGACGAATCTAAAGTTGGTGATAGAAAAATTGAGAATTTGGGAAATTCTTCTGATGACATAGCAAAAGACAGCGCTGTCATAAAAATTAAGTATGGTAATGAGGAAAAAAACAAGACAGTTACTCATTCACGTGAAAGTGAGGAGCAAGAAAAATTAGATGTAACTGGGAAAAAGGATGGAGATAGTGAAGGGTTTGTAGTTGTCACAAACAAGAAAAAAAACAGGCAGAAGATCACAAATGGAGTCTCAGAATTGTACAACCAGCAGTCCATCTGTGCTTCGGTTCGATGA 5028 0.4198 MAPKSGKGKSNKAKAEKKKKDEKAVAPSLVDITVVTPNDTQLVLKGISTDKILDVRRLLAVKTETCHFTNYSLSHEVKGQRLNDRVEVVTLKPCLVTMVEEDYTEETDAIAHVRRLLDIVACTTRSAKPKRSPSNADSKPKKNGKAHKTITSPPATPNGESRVGSPSSEPPASPISDNVGMVAIHPTPKLSDFYEFFSFSHVSPPILHLKRCELKEEDDRRKGDYFQLQVKICNGKVVEVVASEKGFYSVGKLSLQSRTLVDLLQQLSRGFANAYGLLMKAFLERNKFGNLPYGFRSNTWLVPPSVAESPSTFPALPAEDENWGGNGGGQGRNGEYNLRPWATDFAILASLPCKTEEERVVRDRKAFLLHSQFVDTSIFKAVAAIQHVLDSRPNMKDEMNSSPGSILHEDQVGDLLVLVKRDIRGGTKKFESSQKESSTHKENAKKNLIKGLTADESVVVNDTSSLAVVVVHHCGYTATIKVVGNANVRMLQEIEIDDQPDGGANALNINSLRLLLHKSGTESSEGTSSSLSNLDDLDSSNYLVHKVVQECMEKIKEEPSVSKSSIRWELGSCWVQHLQKQENSTDNNSENKEDSKEVEAVKGLGKQFKLLKRREKKPSSLDGPDSMEENDSTPGNVNVGADKVEPNKDESSSSNELEKLLSKDAFSRLKESGTGLHMKSVDELINMAHKFYDEIALPKLATDFGSLELSPVDGRTLTDFMHLRGLQMRSLGEVVKLAENLPHIQSLCIHEMITRAFKHLLKAIIASVDNKANLPSVIASALNFALGGCPVEDTDQTLGGDHHLKIQWLRIFLSKRFGWTLNDEFKHLRKLSILRGLCHKVGLELVPRDYDMESPKPFGKYDIISLVPICKHVGCSSVDGRNLLESSKIALDKGKLEDAVNYGTKALAKMMAVCGPYHRNTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHIELALKYVNRALFLLHFTCGLSHPNTAATYINVAMMEEGIGNVNVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLKILQSKLGSEDLRTQDAAAWLEYFESKALEQQEAAKNGTPKADTSIASKGHLSVSDLLDFISPDRVSKANDSQKKRRAKIVPVSDNNCEEHVDTVADEDILFDNSNDAKTTGEGNIEEKNGTRDSEELKENGDLTRYTPVTSEVVYETSSDEGWKEASSKGRSANAANRKFARRQRPHLSKLSINGSDRGISYRNDIASPLEKGAPKVIAGMSSPSRQSKARNLSLKEDSVNKQTKALLSKNSSAPASVSPLASKSVSYKEVAVAPPGTVLKPLLEKGEIERVSAENEICSSSSVMPLNEGSSQSSIINPVSQEDKSEGTCEIESQQENSEPELETVSLASDKAKLAEANCSKLSAAAKPFNPGTLSLSHQLNSASFTTIYDANVSQAVLVEPVLPPAAARVPCGPRSPLYYRTNYAFRMKHGSTKFHTVRERSGFGAPRIMNPHAPEFVPRGASQTETGDSEKNKLDDSSPKKSISESEKSEIARQILLSFLVKSVHQNIDSTDESKVGDRKIENLGNSSDDIAKDSAVIKIKYGNEEKNKTVTHSRESEEQEKLDVTGKKDGDSEGFVVVTNKKKNRQKITNGVSELYNQQSICASVR* 1676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2163 1675 MobiDBLite consensus disorder prediction 580 599 - -
Lja3g2163 1675 MobiDBLite consensus disorder prediction 1369 1391 - -
Lja3g2163 1675 ProSiteProfiles TPR repeat profile. 922 955 IPR019734 GO:0005515
Lja3g2163 1675 MobiDBLite consensus disorder prediction 1179 1262 - -
Lja3g2163 1675 MobiDBLite consensus disorder prediction 1283 1306 - -
Lja3g2163 1675 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 1672 - -
Lja3g2163 1675 MobiDBLite consensus disorder prediction 124 180 - -
Lja3g2163 1675 MobiDBLite consensus disorder prediction 1534 1555 - -
Lja3g2163 1675 Pfam Translation initiation factor eIF3 subunit 135 709 794 IPR033646 -
Lja3g2163 1675 MobiDBLite consensus disorder prediction 643 657 - -
Lja3g2163 1675 MobiDBLite consensus disorder prediction 1187 1208 - -
Lja3g2163 1675 Pfam Tetratricopeptide repeat 1005 1079 - -
Lja3g2163 1675 Pfam Tetratricopeptide repeat 921 991 - -
Lja3g2163 1675 SMART tpr_5 922 955 IPR019734 GO:0005515
Lja3g2163 1675 SMART tpr_5 1006 1039 IPR019734 GO:0005515
Lja3g2163 1675 SMART tpr_5 964 997 IPR019734 GO:0005515
Lja3g2163 1675 MobiDBLite consensus disorder prediction 1369 1394 - -
Lja3g2163 1675 ProSiteProfiles Clueless (Clu) domain profile. 319 589 IPR025697 -
Lja3g2163 1675 MobiDBLite consensus disorder prediction 1511 1555 - -
Lja3g2163 1675 Pfam Mitochondrial function, CLU-N-term 49 120 IPR028275 -
Lja3g2163 1675 SUPERFAMILY TPR-like 888 991 IPR011990 GO:0005515
Lja3g2163 1675 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 1672 IPR027523 GO:0006996
Lja3g2163 1675 MobiDBLite consensus disorder prediction 1 24 - -
Lja3g2163 1675 MobiDBLite consensus disorder prediction 149 174 - -
Lja3g2163 1675 MobiDBLite consensus disorder prediction 612 657 - -
Lja3g2163 1675 Gene3D Tetratricopeptide repeat domain 881 1128 IPR011990 GO:0005515
Lja3g2163 1675 MobiDBLite consensus disorder prediction 1616 1641 - -
Lja3g2163 1675 CDD CLU-central 711 852 IPR033646 -
Lja3g2163 1675 SUPERFAMILY TPR-like 959 1077 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2163 Lja-Chr3 25334602 25347294 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2163 K03255 - gmx:100784276 2491.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2163 3 25334602 25347294 Lja3g2163 3 25334602 25347294 ECH