Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2146 ATGGAGAACGACCCACAAAGTGAACAAGTGCTGTCGGTGGAGCTTCCAGCTCCTCCTGCTTGGAAGAAACTGTTCTTCCCTAAGAAAGTAGGAACACCAAGGAAACAAAGTGAGATCACATTCATTGCTCCTACCGGGGAAGAGATCAGTTCCAAGAAGCAATTGGAGCAGTACCTGAAGGCACATCCTGGGAATCCTGCGATATCGGAGTTTGATTGGGGAACCGGTGAGACCCCGAGGCGATCAGCTAGGATTAGTGTGAAGGCCAAATCAACTCCGCCACCAGCAGAGACTGATCCTCCAAAGAAACGATCTCGGAAATCATCATCAGGGTCAAAGAAGGATAACACAGAAACTGAATCTGCTTCAGAGGAAGGTAAGGCAAAGTCTGCTGCTGAAGAAAACACGGCTGACCCGAACGATGCTGATGATAAACCAAAGACTGATGCAGAGGAAACTAAGCAGAGTAATGTGGAAGGGGACAATGTGACTGCCAAAAAGCCTCAAGGGGAGGAAGAAGCGTCGTTAGCAGAATCAGGGGAGAAACTTGTTGGGGAAGCTTTGAACGATGCTGTGATGACTGAAACCCCCCAAGAGGAGGCACCAGTAGTTGTATCAGAGAAAGAGAATGGTGCAGTTGATAGTAAGCCTGATAATGTGGAAGGGGAAAATGTGACTGCTGAAAAGCCTCAAGAGGAGGAAGATGCATTGTTAGCAGAAGCTGGGGAGAAGTTTGCTGAGGATACTTTTTACGATGCTGTGATGACTGAAATCCCCCAAGGGGAGGAACCAGTTGTTGAATCAGAGAGAGAAAATGGTGCAGTTGACAGTAACAAGGATAATTCAGGTACTGTGACTCTTGAGGTAAATGGAGGAGCTGAGAAAGAGGAACCAGTAGTTGAATCAGAGAAAGAAAATGGTGCAGTTGACAGTAACCAGGATAATCCAGGTACTGTGACTCTAGTGGAAAATGGAGGAGCTGAGAAAGTGAATCCTACTGTTGAAGACATCATCAATAACAATGCTAAGAATGAAATCCCAGTAAGTGATGGAAAAATCAACATTCAGGCTGAGGAGCAAGTTCAGAAAGTGGTTGACAATGGGATTTGGAGCTTTGCTCAATGA 1125 0.4604 MENDPQSEQVLSVELPAPPAWKKLFFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGNPAISEFDWGTGETPRRSARISVKAKSTPPPAETDPPKKRSRKSSSGSKKDNTETESASEEGKAKSAAEENTADPNDADDKPKTDAEETKQSNVEGDNVTAKKPQGEEEASLAESGEKLVGEALNDAVMTETPQEEAPVVVSEKENGAVDSKPDNVEGENVTAEKPQEEEDALLAEAGEKFAEDTFYDAVMTEIPQGEEPVVESERENGAVDSNKDNSGTVTLEVNGGAEKEEPVVESEKENGAVDSNQDNPGTVTLVENGGAEKVNPTVEDIINNNAKNEIPVSDGKINIQAEEQVQKVVDNGIWSFAQ* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2146 374 MobiDBLite consensus disorder prediction 294 308 - -
Lja3g2146 374 MobiDBLite consensus disorder prediction 165 179 - -
Lja3g2146 374 MobiDBLite consensus disorder prediction 211 233 - -
Lja3g2146 374 SUPERFAMILY DNA-binding domain 8 105 IPR016177 GO:0003677
Lja3g2146 374 MobiDBLite consensus disorder prediction 97 156 - -
Lja3g2146 374 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 7 78 IPR001739 GO:0003677
Lja3g2146 374 MobiDBLite consensus disorder prediction 261 327 - -
Lja3g2146 374 Pfam Methyl-CpG binding domain 14 77 IPR001739 GO:0003677
Lja3g2146 374 PANTHER METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 6 308 IPR039622 -
Lja3g2146 374 Gene3D - 8 82 - -
Lja3g2146 374 MobiDBLite consensus disorder prediction 61 233 - -
Lja3g2146 374 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 11 6 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2146 Lja-Chr3 25123559 25126500 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2146 - - lja:Lj3g3v2200290.1 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2146 3 25123559 25126500 Lja3g2146 3 25123559 25126500 ECH