LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g2119	ATGTGGCGGAGGCTTCTCTCTTCTCACCTCAAAACCCTAGCCACTTGTTCTCCCCAATCTGTTTCCACCGTCGCTGCTCTTAATTGCTCCTCCGTTTCACTCCTCCGTCACTTCTCTGATACTACTTCGATAAAAAAGAAGGTCGAAGATGTAATGCCTATCGCTACTGGTCACGAGCGCGAGGAGCTTCAAGCTAACCTTGAGGGAAGGGATATCCTTGAAATAAATCATCCTGTTGGGCCTTTTGGCACAAAGGAAGCACCTGCTGTTGTTAAATCTTACTATGATAAGAGGATAGTTGGATGCCCAGGTGGTGAAGGCGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTCATGAATGTCCTGTGTGCGCACAGTATTTTGTGCTTGAGGTGGTGGGACCTGGTGGACCACCTGATGGACATGGTGATGATCATCATCATTGA	462	0.4827	MWRRLLSSHLKTLATCSPQSVSTVAALNCSSVSLLRHFSDTTSIKKKVEDVMPIATGHEREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFVLEVVGPGGPPDGHGDDHHH*	154

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g2119	153	PANTHER	CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL	1	153	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Lja3g2119	153	CDD	Cyt_c_Oxidase_Vb	45	138	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Lja3g2119	153	ProSiteProfiles	Cytochrome c oxidase subunit Vb, zinc binding domain profile.	43	142	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Lja3g2119	153	SUPERFAMILY	Rubredoxin-like	44	141	-	-
	Lja3g2119	153	Pfam	Cytochrome c oxidase subunit Vb	54	141	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Lja3g2119	153	Gene3D	Cytochrome c oxidase, subunit Vb	44	138	IPR036972	GO:0005740\|GO:0005751\|GO:0006123
	Lja3g2119	153	PANTHER	CYTOCHROME C OXIDASE SUBUNIT 5B	1	153	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g2119	Lja-Chr3	24779517	24783147	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g2119	K02265		-	gmx:100780886	220.32

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja3g2119	3	24779517	24783147	Lja3g5167	3	94020102	94024300	ECH
	Lja3g2119	3	24779517	24783147	Lja3g2119	3	24779517	24783147	ECH
	Lja3g5167	3	94020102	94024300	Lja3g2119	3	24779517	24783147	PCT