Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2118 ATGCGGTTGTTTCCTCCGCGCGCCTCCTCCATCATGACAACTCCAACCGCATCCGGCTCGGGTTCCGTCGTCTGGTTCCGGAAAGGTCTTCGGATCCACGACAACCCTGCTCTCGAGTTCGCTTCCCGAGGAGCTTCAAATCTCTACCCTGTCTTCGTCATCGACCCGCATTACATGAAACCCGACCCGTACGCTTCCTCACCCGGATCCTCCCGCGCCGGTCTCAACCGCATCAATTTCTTGCTCCAGAGCCTTCGCGACCTTGATCTTAACCTGAAGAAACTCGGTTCAAGACTCTTGATTCTTAAGGGTGACCCTGCCGAAGTTCTCATTCAATGCTTGAAACAGTGGAATGTCAAGAAGTTATGCTTTGAGTATGACACTGAACCATATTATCAGGCTCTGGATATTAAAGTTAAGAGCTTTGCCGTTGCGGCAGGAATTGAAGTTTTCTCTCCTGTAAGTCACACACTCTTCAATCCAATGGACATTATACAGAAGAATGGAGGGAAGCCGCCGCTTAGTTATCAATCATTTGTCAAGCTTGCTGGGGATCCGCCTTCCCCTCTTTTGACCGAGCTATCTTCACTTCCTCCAGTAGGCCATCTTGGAGGCTGTGATATTTTTGAAGTTCCAACAGTCGAAGACCTTGGATATGAAGATGCTAAACAGGATGAGTTTTCTCCTTTCAAAGGTGGTGAATCAGAAGCATTGAAGAGGTTGGAAGAATGCATGAAAGACAAGAAGTGGGTGGCAAACTTTGAGAAGCCAAAGGGCAATCCAGCTGCATTCCTTAGGCCCGCAACAACTATTTTATCACCTTACTTGAAATTTGGTTGTCTCTCTTCCAGATATTTCTACCATTGCATTCAAGATGCATATAAAAGTGTGTCAAAGCATACATCTCCACCTGTTTCTCTTCTAGGACAGTTGTTATGGCGAGACTTCTTTTACACAGCAGCTTTTGGGACTCCAAATTTTGATAGGATGAGAGGCAACAGGATTTGCAAGCAGATTCCTTGGAAGGATGATGATAAATTGTTGGAGGCTTGGAGGGAGGCTAGGACAGGGTTTCCTTGGATTGATGCTATCATGGTCCAGCTACGTCAATGGGGTTGGATGCATCATTTGGCACGACATTCTGTTGCATGTTTTCTCACGCGAGGTGATCTGTTTGTTCATTGGGAAAAAGGACGTGATGTCTTTGAGAGGCTTCTGATTGATTCAGATTGGGCGATTAATAACGGAAACTGGATGTGGCTCTCATGTTCATCTTTCTTTTATCAGTATAATCGGATTTATTCCCCAATCACATTTGGGAAGAAGTATGACCCCAATGGGGATTATATTAGGCATTTTCTCCCAGTCTTAAAAGATATGCCCAAACAGTACATTTATGAACCTTGGACTGCTCCTATAAGCATCCAGACCAAAGCAAATTGCATAATTGGCAAAGACTACCCAATGCCAGTTGTTTCTCATGATTTAGCAAATAAAGAGTGTCGAAGGAAAATGGGGGAGGCATATGCATTGAATAGAAAATTGAATGGTTTGGTTAGTGAAGATGAGCTGAAACACTTGAGAAGGAAATTAGATGCAGGTGAAGAGCAAGAGGCTAAAGCTAAAAGATCTAGGCAACAGCTGATTGGCTGA 1653 0.4471 MRLFPPRASSIMTTPTASGSGSVVWFRKGLRIHDNPALEFASRGASNLYPVFVIDPHYMKPDPYASSPGSSRAGLNRINFLLQSLRDLDLNLKKLGSRLLILKGDPAEVLIQCLKQWNVKKLCFEYDTEPYYQALDIKVKSFAVAAGIEVFSPVSHTLFNPMDIIQKNGGKPPLSYQSFVKLAGDPPSPLLTELSSLPPVGHLGGCDIFEVPTVEDLGYEDAKQDEFSPFKGGESEALKRLEECMKDKKWVANFEKPKGNPAAFLRPATTILSPYLKFGCLSSRYFYHCIQDAYKSVSKHTSPPVSLLGQLLWRDFFYTAAFGTPNFDRMRGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMVQLRQWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPITFGKKYDPNGDYIRHFLPVLKDMPKQYIYEPWTAPISIQTKANCIIGKDYPMPVVSHDLANKECRRKMGEAYALNRKLNGLVSEDELKHLRRKLDAGEEQEAKAKRSRQQLIG* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2118 550 MobiDBLite consensus disorder prediction 531 550 - -
Lja3g2118 550 PANTHER (6-4)-PHOTOLYASE, ISOFORM A 22 516 - -
Lja3g2118 550 Coils Coil 524 544 - -
Lja3g2118 550 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g2118 550 Gene3D - 156 318 - -
Lja3g2118 550 PANTHER CRYPTOCHROME 22 516 IPR002081 -
Lja3g2118 550 Gene3D HUPs 23 232 IPR014729 -
Lja3g2118 550 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 20 158 IPR006050 -
Lja3g2118 550 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 21 198 IPR036155 -
Lja3g2118 550 Pfam DNA photolyase 22 181 IPR006050 -
Lja3g2118 550 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 325 549 - -
Lja3g2118 550 Pfam FAD binding domain of DNA photolyase 309 505 IPR005101 -
Lja3g2118 550 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 217 511 IPR036134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2118 Lja-Chr3 24774586 24778635 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2118 K02295 - gmx:100780347 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2118 3 24774586 24778635 Lja3g2118 3 24774586 24778635 ECH