Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2106 ATGGTTCCACTTTTTGAGAGCATGGGCATTGATGATGCAAATGTCTATGAGAAAGTAGAAGCCATGGCCAACATCTTGTGGCCTGATGGAAACCCAAGTTTCAGCAAAACTATAAATTCATTCTCTGAGCAGCTATCAGAGTTGGATCATATTATTAGGAAGATGGTTTTGGAGAGTTTGGGTGTTGAAAAGTACTTGGATGAGCATCTCAACTCAACCAATTACCTCCTCCGGGTTATGAAATACAAAGGCCCTGAAACCTCTGACACAAAGCTAGGCCTCACCACTCACTCAGACAAAAACATTGTGACCATATTGTACCAAAATCAGGTGGAGGGTTTGGAGGTGCTCACCAAAGATGGCAAATGGATAAGCTACAAGCCTTCCTCCGAAAGTTTCGTTGTTATGATCGGTGATTCTCTCCATGCATGGTCAAACGGGAGGTTGCATTCACCCTTTCACCGAGTGATGATGACTGGGAACAAGGCAAGATACTCTACAGGGTTGTTCTCTATTCCGAAAGGAGAACACATCATAAAAACACCGGAGGAGCTGGTGGATGAGGAGCACCCTTTGCTATTTAAACCTTTTGATCATGTTGAGTTCCTCAAGTATTATTACATTGAAAAGGGTCGGGTCAGAGAGGCCAGTTCGCCCTGCGCACTTACTGTGGTGTTTGAATTGTTGTCATTGACAGGGATTAGTTCAATGATATAG 717 0.4365 MVPLFESMGIDDANVYEKVEAMANILWPDGNPSFSKTINSFSEQLSELDHIIRKMVLESLGVEKYLDEHLNSTNYLLRVMKYKGPETSDTKLGLTTHSDKNIVTILYQNQVEGLEVLTKDGKWISYKPSSESFVVMIGDSLHAWSNGRLHSPFHRVMMTGNKARYSTGLFSIPKGEHIIKTPEELVDEEHPLLFKPFDHVEFLKYYYIEKGRVREASSPCALTVVFELLSLTGISSMI* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2106 238 Gene3D - 4 224 IPR027443 -
Lja3g2106 238 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 1 215 - -
Lja3g2106 238 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 1 215 - -
Lja3g2106 238 PRINTS Isopenicillin N synthase signature 97 118 - -
Lja3g2106 238 PRINTS Isopenicillin N synthase signature 133 159 - -
Lja3g2106 238 Pfam 2OG-Fe(II) oxygenase superfamily 74 170 IPR044861 -
Lja3g2106 238 SUPERFAMILY Clavaminate synthase-like 20 210 - -
Lja3g2106 238 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 72 173 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2106 Lja-Chr3 24565496 24568022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2106 41 207 Glycosyltransferase AT5G59530 27.485 5.99e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2106 - - gmx:100784444 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2106 3 24565496 24568022 Lja3g2106 3 24565496 24568022 ECH