Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2089 ATGTTCTATGGTGCAGTGGTATGGGACCCTTGGCTTATTGTTGCTCAAATTGTTTGTCTGCAATGCATGTACTATATCACATTGGGATTGTTGTTGTCATTACTTGTTGGAACTCGCGTATCGCGGATGAGCCTCGTGTATTTCTTTGACTATGTTACAATCTCTACATCTACGGTTACTGGTTGGTCTGTTGTTGCTTCATTTTTGCTCAGTTCAGTTGCAGGGGCTGTATATATGCTGTATTTGATTGAAAGAGCAAAGAAGTGCTTGGATTTTTCGGCCACTCTCTACATCATCCATCTGTTTCTATGCATTGTGTACGGGGGTTGGCCTTCTGCTATAACGTGGTGGATTGTGAATGGTACTGGAATTGCAGTGATGGCTTTGCTAGGTGAATATTTGTGTATCAGGCGGGAACTCCAGGAGATACCAATAACACGATTACGTTCAAATGTTTGA 459 0.4227 MFYGAVVWDPWLIVAQIVCLQCMYYITLGLLLSLLVGTRVSRMSLVYFFDYVTISTSTVTGWSVVASFLLSSVAGAVYMLYLIERAKKCLDFSATLYIIHLFLCIVYGGWPSAITWWIVNGTGIAVMALLGEYLCIRRELQEIPITRLRSNV* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2089 152 Pfam Integral membrane protein S linking to the trans Golgi network 5 144 IPR019185 -
Lja3g2089 152 PIRSF SYS1_homolog 1 152 IPR016973 GO:0000139
Lja3g2089 152 PANTHER PROTEIN SYS1 HOMOLOG 1 151 - -
Lja3g2089 152 PANTHER SYS1 1 151 IPR019185 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2089 Lja-Chr3 24331314 24334144 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2089 K20318 - tcc:18595890 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2089 3 24331314 24334144 Lja3g2089 3 24331314 24334144 ECH