Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2081 ATGAAAATGTTTCGTTGGCTATTGAAACCAAAATTCTATTCAAAATGCATATCATATGTGAAGGTTATAAAGACGCGTCTGGATATAGCAGAGAAGAAGATGAGTGCCCGTGTGAAGTTTATGAAGAGTGACATTGCTGAGCTTCTTAGGATTGGCTTTGATTTCGATGCATACAAAAGGGTTGAAGAGCTTGTGTTGGAGCAAAATAAGTTATCCTGCTATGAGCTCATTGCAAAGTTTATTGAAAGTATATCAGATCATCTTGAAGACCTAACTAAGCAGAGGATTTGCCCTGATGAATGCAAGGAAGCTGTACCATCATTGATGTATGCCGCAGCAAGATTCGCTGATCTGCCGGAGTTGCGAGACCTCAGAGCTTTGTTTGCTGAGAAATTTGAGAATTCCCTTGAACCTTTTCTAAGTAAAGAGTTGGTTGAGAAATTGAGAAGAGATCCACCTGCAAGGGAAACGAAGATTGGAATCTTACATGATATAGCACAAGAGTTCTCTGTAAAGTGGGATGACAAGACTCTGAAGCAAAGACTTTATAATACACAACCTTCATTACATGAAGAGAGGCCTAAGCCTGCTAAACAATTTCAGAGAAGAAAGGATCGAAGCGATGACTCGGTGATGTACCGTAGCAGCAGCGATGATGAAACAAGTACCGACACGTCATCTCACGATGGCCAAAAGGCTAGTTCAAGTTCATTCGGAAGTGTATCTGAGGATGAAGTACTGGAAATTAAGAGGCCAATTTCCCCTTGGCTCTTTCCTCCACCTTACCTCAAACAAGGTGAACCAAGTTCAAAGAAAACAATAACAGATTCTGAAGCTGTACCAAAAAAGGAATCAAGCAAGCATCTTCATGAACCGGTTGTCAAAGAAAAGAAAACCCTGATTTCAACAAGGAGGAGAAATCACCAATCAATATCTGATCCTAAAGCTTATCCTTCTGAAGTAGATTCAGGGCAAAAAAGAAGTGGTACTTCATCACATGTCAGAGGAAAATCTCTTCCTAATGATCATACAAATGTAGAAGCAGTAAAATCAAAGGATTATACACGAGCAACTTCATTAGATTCAGGAAGTGCAAGGCATGTGCATCCTAATCTACCTGACTATGATGATTTGGTAGCTCGTCTGGCATCTGTTACTCGAAGATCATAA 1170 0.4009 MKMFRWLLKPKFYSKCISYVKVIKTRLDIAEKKMSARVKFMKSDIAELLRIGFDFDAYKRVEELVLEQNKLSCYELIAKFIESISDHLEDLTKQRICPDECKEAVPSLMYAAARFADLPELRDLRALFAEKFENSLEPFLSKELVEKLRRDPPARETKIGILHDIAQEFSVKWDDKTLKQRLYNTQPSLHEERPKPAKQFQRRKDRSDDSVMYRSSSDDETSTDTSSHDGQKASSSSFGSVSEDEVLEIKRPISPWLFPPPYLKQGEPSSKKTITDSEAVPKKESSKHLHEPVVKEKKTLISTRRRNHQSISDPKAYPSEVDSGQKRSGTSSHVRGKSLPNDHTNVEAVKSKDYTRATSLDSGSARHVHPNLPDYDDLVARLASVTRRS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2081 389 PANTHER IST1 FAMILY MEMBER 11 386 IPR005061 GO:0015031
Lja3g2081 389 MobiDBLite consensus disorder prediction 257 374 - -
Lja3g2081 389 MobiDBLite consensus disorder prediction 227 242 - -
Lja3g2081 389 Gene3D - 6 182 IPR042277 -
Lja3g2081 389 MobiDBLite consensus disorder prediction 186 226 - -
Lja3g2081 389 Pfam Regulator of Vps4 activity in the MVB pathway 20 172 IPR005061 GO:0015031
Lja3g2081 389 MobiDBLite consensus disorder prediction 323 339 - -
Lja3g2081 389 MobiDBLite consensus disorder prediction 276 300 - -
Lja3g2081 389 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 11 386 - -
Lja3g2081 389 MobiDBLite consensus disorder prediction 351 365 - -
Lja3g2081 389 MobiDBLite consensus disorder prediction 184 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2081 Lja-Chr3 24195975 24198183 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2081 - - gmx:102665874 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2081 3 24195975 24198183 Lja3g2081 3 24195975 24198183 ECH