Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2061 ATGGAAAATGCATCCGAAAACCCAAAATTCCCAGGCTTCCCTTTCAAACCCTATTCAATCCAGATCGATTTCATGAACGCCCTCTATCAATCCCTCAACCAAGGTGGCATCTCCATGTTGGAAAGCCCAACCGGTACTGGGAAGACCATGAGTGTCATTTGTAGTGCTTTGCAATGGGTGCTTGATCGGCGACAACAGGAAGCAGCAGGGCTTGTTGTAGGTGGTAGTAAGGATCAAGCTAATGGCAATGGTGGGGTTGGTTCAGATGATGAACCTGATTGGATGAGAGATTTCTTTGTCGAAAAAGAGGGAAAGATAGGAAATAAGAAGGAAAAGTTTGGGAAACCTGATAGTAATCGCGAAATTAAGAATGGAAGTCGTAAGGGTTTTAAGGATCTGGGTATTGGTGAGACTCGTGTTGAAAAGGGGCGTGAGGGTTTGCGGAAAAAAAATGATGTAGTGGATGTTAATGATGAGGAATTTTTACTGGAAGAATATGAGAGTGATGATGAGAAAGCACCTGGTGGTGGTGTGTCCAAGAGGAAGGCTGTGAAATCCACTTTGGCTTCCTCTAGTGAGGATGAGTCTGATAATGGTGATGATGAGGGTGAGGAGGAGGAGAAGACATTGAAGGTTTATTTCTGTAGTCGAACGCATTCTCAGCTTTCACAGTTCGTAAAAGAGTTGCAGAAGACGGTCTTTGCTAATGAGATGACTGCTGTGAGTTTAGGCTCCAGGAAAAATCTCTGCATTAATGAAGAAGTACTAGCTCTTGGAAATGCGACACGCATAAATGAGCGGTGCTTGGAGCTCCAGAAGAAAAAGAAAAATGATGCTACGAAAGTTAAGAGCTTAAGAGCAGGTGCAGGGGTACGCCGAACAAAGGCCTCCTCTGGTTGCCCAATGCTTAGAAAACATAGACTACAACAAGAATTCAGGAATGAGATATCTCAACAAGGGCCTTTGGATATTGAAGATCTTGCTAACCTTGGAAGAACTGTGGGAACTTGTCCTTACTATGGCTCTAGAAGCATGGTTCGGAGAGCTGATCTTGTCGTCCTACCGTATCAATCTCTTCTTTCAAAATCATCTCGTGAAGCACTTGGTCTGAATTTGAAGTCCAATATTGTTATCATAGATGAGGCTCACAATTTAGCTGATTCACTCATCAGCATGTATGACTCCAAAATTACTTTATCACAGCTGGAGAAGGTGCATTGCCATGTGGAACAGTACTTTACAAGATTCCGGAACCTTTTGGGACCTGCTAATAGGAGATATATTCAGACGCTGATGGTCCTCACACAAGCATTTCTCCGAGTACTGCTCAATGAGAAAGATGGATATCTCATAGATTCTTGCCGTGATATAGAACATGCTGCTGAAGAAAGTAGAGCCTCTGATTTTACTATGGCCATCAATGATTTTTTATTTGAACTAAATGTGGACAATATCAACTTGGTCAAATTGTTCAAGTACATAAAGGAAAGTAATATCATGCACAAGGTTAGTGGTTATGGAGAAAAGCAGGCTACCTTGGAGAAGATATCTTCACCTGAATCAAGGGAACATGGTGAAGAGGGGAGCTGCCAGTCAGCTTTCCAGGCATTAGCTGACATATTGCTGTCGTTGACAAACAAGGACAGTGATGGAAGGATAATAATTTCCAGGTCTAGACCAACCAGCCTCAGGAAACAAGGAGGGTATATTAAATATGTTATGCTCAGTGGAGAGAAGATTTTCTCTGAGATTGTAGATGAAGCACATGCCGTTGTATTAGTAGGAGGAACACTTCAACCTATAGAAGAGACAAGGGAGCGACTCTTTCCATGTTTGCCACCAAATCAGTTGCATTTTTTTTCATGTGGTCATATTGTCCCTCCAGATAGCATTATGCCAATTGCAGTCACTCGTGGGCCTACTGGCCGCTCCTTTGATTTTAGCTACAGCTCTAGGAGCTCACCAGATGTGATGCGAGAACTAGGTCTTTTGCTATGCAACTTGGTGACCGTGGTTCCAGAAGGAATTGTAGTCTTTTTCCCTTCATTTGATTGTGAAGGTAGAGTCTATCAAAACTGGGAGTCTTCTGGCATCCTTGAAAGAATTACGAAGAGGAAGCGTGTCTTTAGAGAGCCCAGAAATAATATGGATGTTGAATCTGTTCTTAAGGAATATAAAGATACCATTTATGGCCTATCGAGTATGAATTCAGATGCAAACCGAGCATCTCGTAGTGGTGCAATACTCCTTGCTGTTGTTGGTGGGAAGATATCTGAAGGAATCAACCTAAGTGATGGGATGGGTCGATGTATAGTCATGGTTGGACTGCCATATGCTAGCCCGTCTGACATTGAGTTGCTGGAGAGGATAAAGCATATTGAAGGTTTTGGAAATTCAAAGTTCCTTGAAAATCCTACATTTTCTTCTAGCTATAATTTATACAGTGGAGATGCACAAGGTGGTTTTGACATCTTAAAAAGTTGCAGCCACAGGGGAAGAGAGTATTATGAAAACCTTTGCATGAAGGCTGTAAATCAATCAATAGGTAGAGCGATCCGTCACATCAATGACTATGCAGCAATTTTGTTGGTTGACACAAGGTATGCATCTGATTCCTCAAAACGGAGCTTTGCCCATCCAGTCACCAAGCTTCCCCAATGGATAAAAGATCGTTTTGTTTCTACTTCCAACAACTATGGCGAAATACATAAGTTGCTGCATCAGTTTTTCAAACTCAAAAAGACATGCTGCCAATAG 2757 0.4222 MENASENPKFPGFPFKPYSIQIDFMNALYQSLNQGGISMLESPTGTGKTMSVICSALQWVLDRRQQEAAGLVVGGSKDQANGNGGVGSDDEPDWMRDFFVEKEGKIGNKKEKFGKPDSNREIKNGSRKGFKDLGIGETRVEKGREGLRKKNDVVDVNDEEFLLEEYESDDEKAPGGGVSKRKAVKSTLASSSEDESDNGDDEGEEEEKTLKVYFCSRTHSQLSQFVKELQKTVFANEMTAVSLGSRKNLCINEEVLALGNATRINERCLELQKKKKNDATKVKSLRAGAGVRRTKASSGCPMLRKHRLQQEFRNEISQQGPLDIEDLANLGRTVGTCPYYGSRSMVRRADLVVLPYQSLLSKSSREALGLNLKSNIVIIDEAHNLADSLISMYDSKITLSQLEKVHCHVEQYFTRFRNLLGPANRRYIQTLMVLTQAFLRVLLNEKDGYLIDSCRDIEHAAEESRASDFTMAINDFLFELNVDNINLVKLFKYIKESNIMHKVSGYGEKQATLEKISSPESREHGEEGSCQSAFQALADILLSLTNKDSDGRIIISRSRPTSLRKQGGYIKYVMLSGEKIFSEIVDEAHAVVLVGGTLQPIEETRERLFPCLPPNQLHFFSCGHIVPPDSIMPIAVTRGPTGRSFDFSYSSRSSPDVMRELGLLLCNLVTVVPEGIVVFFPSFDCEGRVYQNWESSGILERITKRKRVFREPRNNMDVESVLKEYKDTIYGLSSMNSDANRASRSGAILLAVVGGKISEGINLSDGMGRCIVMVGLPYASPSDIELLERIKHIEGFGNSKFLENPTFSSSYNLYSGDAQGGFDILKSCSHRGREYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDSSKRSFAHPVTKLPQWIKDRFVSTSNNYGEIHKLLHQFFKLKKTCCQ* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2061 918 SMART Cxpdneu3 683 870 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lja3g2061 918 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 9 900 IPR045028 -
Lja3g2061 918 PANTHER ATP-DEPENDENT DNA HELICASE DDX11-RELATED 9 900 IPR028331 -
Lja3g2061 918 MobiDBLite consensus disorder prediction 109 136 - -
Lja3g2061 918 CDD SF2_C_XPD 629 868 - -
Lja3g2061 918 Gene3D - 643 883 IPR027417 -
Lja3g2061 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 397 IPR027417 -
Lja3g2061 918 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 7 431 IPR014013 GO:0005524
Lja3g2061 918 Pfam Helicase C-terminal domain 665 879 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lja3g2061 918 TIGRFAM rad3: DNA repair helicase (rad3) 141 901 IPR013020 GO:0003678
Lja3g2061 918 Gene3D - 184 441 IPR027417 -
Lja3g2061 918 Gene3D - 14 73 IPR027417 -
Lja3g2061 918 MobiDBLite consensus disorder prediction 165 205 - -
Lja3g2061 918 SMART deadxpd 9 425 IPR006554 GO:0003678|GO:0016818
Lja3g2061 918 Pfam DEAD_2 214 402 IPR010614 GO:0003677|GO:0003678|GO:0005524
Lja3g2061 918 SMART ultradead3 13 460 IPR014001 -
Lja3g2061 918 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2061 Lja-Chr3 23925049 23929470 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2061 K11273 - gmx:106794132 1408.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2061 3 23925049 23929470 Lja3g2061 3 23925049 23929470 ECH