Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2000 ATGGTGAATTCTGAAGGATTGGGTGGGTCGGCGAAACAATATGGTGTTACAAAGCCAATATCAATGGCCGGTCCCACTGGTTCTGATTTGCAAAGGACTCTGGAGTTGGAGAAGTTTGTTGTTGATTCAGGGCTTTATGAAAGCAGGGAGGAAGCTTCCAAGAGAGAAGAAGTTCTTCACCGACTCGGACAGGTAGTCAAAGATTGGGTGAAGCAACTTACCCGCATAAGAGGATACACTGATCAAATGGTTGAAGATGCAAATGCTGTCATTTTCACTTTTGGTTCTTATCGCCTTGGTGTTCATGGGCCTGGAGCTGACATAGACACTTTGTGCATTGGGCCGTCCTATATAAACCGGGATGATGATTTTTTCTACACATTGCATGATATCCTAGCTAGCATGGAAGAAGTTACAGAACTGCAACCAATTCCAGATGCTCATGTCCCAGTGATGAAATTTAAGTTTGATGGAATATCAATTGACCTACTTTACGCAAGTGTTTCCCGCTTGATTGTACCGGAAGACTTAGACATATCCGATGTCTCTGTTCTACACAATGTTGACGAGCGTACTGTTCGAAGTTTGAATGGCTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCAAATGTTGAGCATTTTCGAACAACACTTTGTTACTTGAAGTTTTGGGCTAAAAGGCGAGGCGTGTATTCCAACGTGACAGGTTTTCTCGGCGGTGTTAACTTGGCCCTTCTTGTAGCTCGAGTTTGCCAGTTGTATCCAAATGCAGTTCCAAGCATGCTTGTCTCTCGATTCTTTAGGGTTTACACCCAGTGGCGGTGGCCAAATCCTGTCATGTTATGTCCAATAGAGGAGAATGAGCTAGGGTTTTCTGTATGGGATCCTCGTAGAAATCCTCGTGATAGAACCCATCACATGCCAATCATTACTCCTGCCTATCCATGCATGAACTCTAGTTATAATGTTTCTACAAGCACACTTCGTGTCATGATGGAGCAGTTCCAATTTGGCAACATGATCTGCGGGGAAATTGAACTGAACAAAAATCGTTGGAGTGCGCTATTTGAGCCATACATTTTCTTTGAAAGCTATAGAAACTATTTGCAAGTTGACATAATTGCTGCTGATGTTGATGACTTGCGCTCTTGGAAAGGTTGGGTGGAATCTCGCCTTCGACAGCTGACTTTAATGATTGAGCGTGACACTTTCGGGAAGTTGCAGTGCCATCCTAATCCTCATGAGTATGTTGACACGTCAAAGCAGTGCGCACATTGTTCTTTCTTTATGGGTTTGCAGAGGAAGCAAGGGGAGGTTGTTCAAGAAGGCCAGCAATTTGATATACGTGGGACTGTTGAGGAATTTAGACATTCAGTTAACATGTACAATTTTTGGAAACCGGGGATGGACATGTATGTTTCTCACGTTCGTAGAAGACAAATCCCATGCTATGTGTTTCCTGATGGTTACAAACGACCTCGACCACCAAAGCCAACATCACAGCTGGATATTTCTCCAAAATCTTCTCATGAAGATGAGGTTTCTGGGTCTGAACATAGTGAGAGAAACCATAAGAGGAAGTATGACAAGGCAGGTGTGAAGCAGGATGGTATACTTAAGAAGCATTCTACCAGTCCTCCTGTGAATAGCTTGAGTAGACCCAACTTGTGCCAAGGTCTTGGTGATTTGTCTGTTGATGCTGTATCTCATAGTCCAGAGTTGAGAAATGTGGAGAGCCTGTCCAACAGTGGGCAAGATGATTTGGGTAGAACAGTGTCTCCTGAATCTGAACCTGAATGCGCCTCAAATTCTAGTGTGATTACATCAAGTGATGGTGGTTTTTCTGAAGACATGGGTTCTGTATCAGTGGCAGGTTATGTTGAGGATGGCACCAGGGGTGTTGAGGTGACGATCAATGGCAGGTTTGAGGGTACCACTTTTGGAAGAGATTTTGTCACTCCTGTGAAAAATACAGTGCCGAGTGGAAATGGAGCATTACAAGACACGGTACAGGAACAGTTGGAGCCAAATGCAGTGCTAGGGACGATTCTTGATTCTAACGGAGGAGTTCACTCAGAAGTGGTGCAAAACCCGATGATAAGACTGAGCGTAGCATCGACGGTGTGA 2130 0.4418 MVNSEGLGGSAKQYGVTKPISMAGPTGSDLQRTLELEKFVVDSGLYESREEASKREEVLHRLGQVVKDWVKQLTRIRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCIGPSYINRDDDFFYTLHDILASMEEVTELQPIPDAHVPVMKFKFDGISIDLLYASVSRLIVPEDLDISDVSVLHNVDERTVRSLNGCRVADQILKLVPNVEHFRTTLCYLKFWAKRRGVYSNVTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNMICGEIELNKNRWSALFEPYIFFESYRNYLQVDIIAADVDDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPNPHEYVDTSKQCAHCSFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYNFWKPGMDMYVSHVRRRQIPCYVFPDGYKRPRPPKPTSQLDISPKSSHEDEVSGSEHSERNHKRKYDKAGVKQDGILKKHSTSPPVNSLSRPNLCQGLGDLSVDAVSHSPELRNVESLSNSGQDDLGRTVSPESEPECASNSSVITSSDGGFSEDMGSVSVAGYVEDGTRGVEVTINGRFEGTTFGRDFVTPVKNTVPSGNGALQDTVQEQLEPNAVLGTILDSNGGVHSEVVQNPMIRLSVASTV* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2000 709 MobiDBLite consensus disorder prediction 576 615 - -
Lja3g2000 709 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Lja3g2000 709 CDD NT_PAP_TUTase 54 209 - -
Lja3g2000 709 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 359 - -
Lja3g2000 709 SUPERFAMILY Nucleotidyltransferase 14 208 IPR043519 -
Lja3g2000 709 Gene3D - 15 357 - -
Lja3g2000 709 PANTHER NUCLEAR POLY(A) POLYMERASE 4 1 553 - -
Lja3g2000 709 Pfam Nucleotidyltransferase domain 85 162 IPR002934 GO:0016779
Lja3g2000 709 Pfam Poly(A) polymerase central domain 15 359 IPR007012 GO:0004652|GO:0043631
Lja3g2000 709 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lja3g2000 709 Pfam Poly(A) polymerase predicted RNA binding domain 362 420 IPR007010 GO:0003723|GO:0043631
Lja3g2000 709 Pfam Poly(A) polymerase predicted RNA binding domain 418 495 IPR007010 GO:0003723|GO:0043631
Lja3g2000 709 PANTHER POLY A POLYMERASE 1 553 - -
Lja3g2000 709 Gene3D Poly(A) polymerase predicted RNA binding domain 362 477 - -
Lja3g2000 709 MobiDBLite consensus disorder prediction 488 556 - -
Lja3g2000 709 MobiDBLite consensus disorder prediction 507 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2000 Lja-Chr3 23151894 23158307 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g2000 K14376 - gmx:100783237 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2000 3 23151894 23158307 Lja3g2000 3 23151894 23158307 ECH