Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1973 ATGTCGGACAACAACGCCATCACCTCCCCGCTACTCTCCTCCGATCACCTAATCATCACCGTCGAATCCGACTCCGCTCCCCCCGCCGCCTCCTCACCGAATCCCTTCCGCGCGGTGGGATGCGATGCGGAAGAGTTGACCGTGCCGCCGGCAATCACGGTGGACCCGTTCCGCAACGACAAGGCCAGGATTAAGGGAGTATACGATTGGGTCAGGACACTGGTCTGCGTGCCGCTCATGCTGGCGCGGTTGGTGCTGTTCGGACTGTGCCTTGCGGTGGGGTTTGTGGCGACCAAGTTGGCGCTCTATGGATGGAAGGATAAGGAGAATCCCATGCCTGTGTGGAGGTGTAGAGTCATGTGGGTCACTCGAATTTGCGCTAGATGCATCCTCTTCGCTTTTGGCTATCAGTGGATAAAACGGAAGGGAAGACCTGCACCGAGGGGAATTGCTCCAATAATTGTATCGAATCATGTTTCGTATATTGAGCCTATCTTCTATTTCTATGAACTATTTGCCACCATTGTGGCATCTGAGTCTCATGACTCCTTACCTTTTGTTGGCACCATTATTAGAGCAATGCAGGTCGTATATGTTAACAGGTTCTCACCATCATCAAGGAAGAAAGCTATAAGAGAAATAAAGAGAAGGGCTTCTTGCGATAGATTTCCTCGAGTGCTATTATTTCCTGAGGGAACCACGACTAATGGTAGGAACCTCATTTCCTTCCAACTCGGTGCATTTATCCCTGGGTACCCAATCCAGCCTGTAATTGTACGCTATCCTCATGTGCACTTCGATCAATCTTGGGGTAATGTTTCTTTGGCTAAGCTTATGTTTAGGATGTTCACCCAGTTCCACAACTTCTTCGAGGTAGAATATCTTCCTGCCATTTCACCCCTGCATGATAAGGAAACTGCGGTACATTTTCGTGAAAGGGTTAGCCGTGCTATGGCAGCTGCAATGAATACTGTCCAAACTGGACATTCATATGGAGACATAATGCTTCATATGAAAGCTCAAGAAGCAAAACAGGAGAACCCCTCAAGTTATATGATTGAAATGGCCAAGGTGGAATCATTATTTCATATCAGCAGCTCGGAAGCTGTGGACTTTCTGGACAAATTCTTGGCTATGAATCCTGATCCAAGTGGTCGTGTTCAATATCGTGACTTTTTGAGGGTTTTAAGAATTAAGGCTTGCCCTCTATCTCGAAAGGTATTTGTATTCATTGATGTGGAGAAGAGTGGGACGATTACATTCAGACAGTTCTTGTTTGGATCTGCGCATGTCATGAAGCAGCCAGGGTTCCGTCAAGCCTGTGAAGTTGCGTTTGCAGAGTGTGGTGGTGCAGTAAAGCCCTACATTGTTGAACAAGAATTACGAGATTTTGTCCAATCTGCTATCCCGAGCTGGAATGAGGATGAGGTCCATGATTTTTTCATGTTATTTGATAAAGATAACGACGGGAAAATTGACAAGGATGAATTTCTTTCATGCCTCAGTAGAAATCCTCTTCTGATAGCTTTCTTTACACCTCAACCACAGCACAAGGAAACCGGTTGTAATGGAGTGTTAGACATAGTGTGA 1590 0.4654 MSDNNAITSPLLSSDHLIITVESDSAPPAASSPNPFRAVGCDAEELTVPPAITVDPFRNDKARIKGVYDWVRTLVCVPLMLARLVLFGLCLAVGFVATKLALYGWKDKENPMPVWRCRVMWVTRICARCILFAFGYQWIKRKGRPAPRGIAPIIVSNHVSYIEPIFYFYELFATIVASESHDSLPFVGTIIRAMQVVYVNRFSPSSRKKAIREIKRRASCDRFPRVLLFPEGTTTNGRNLISFQLGAFIPGYPIQPVIVRYPHVHFDQSWGNVSLAKLMFRMFTQFHNFFEVEYLPAISPLHDKETAVHFRERVSRAMAAAMNTVQTGHSYGDIMLHMKAQEAKQENPSSYMIEMAKVESLFHISSSEAVDFLDKFLAMNPDPSGRVQYRDFLRVLRIKACPLSRKVFVFIDVEKSGTITFRQFLFGSAHVMKQPGFRQACEVAFAECGGAVKPYIVEQELRDFVQSAIPSWNEDEVHDFFMLFDKDNDGKIDKDEFLSCLSRNPLLIAFFTPQPQHKETGCNGVLDIV* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1973 529 Pfam EF-hand domain 477 502 IPR002048 GO:0005509
Lja3g1973 529 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Lja3g1973 529 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 117 329 - -
Lja3g1973 529 SUPERFAMILY EF-hand 357 513 IPR011992 -
Lja3g1973 529 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Lja3g1973 529 Gene3D - 353 506 - -
Lja3g1973 529 CDD LPLAT_LPCAT1-like 127 335 IPR045252 GO:0008374
Lja3g1973 529 PANTHER LYSOPHOSPHATIDYLCHOLINE ACYLTRANSFERASE 1-RELATED 30 516 - -
Lja3g1973 529 CDD EFh 405 498 IPR002048 GO:0005509
Lja3g1973 529 SMART efh_1 476 504 IPR002048 GO:0005509
Lja3g1973 529 SMART efh_1 403 431 IPR002048 GO:0005509
Lja3g1973 529 Pfam Acyltransferase 151 256 IPR002123 GO:0016746
Lja3g1973 529 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 30 516 - -
Lja3g1973 529 SMART plsc_2 152 262 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1973 Lja-Chr3 22654042 22663593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1973 104 333 Acyl Lipid Metabolism Gene Families AT1G80950 30.385 1.34e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1973 K13510 - gmx:100818109 873.618