Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1954 ATGGCGCCGCCGACGCCGGACGCCATCGCCGCCTTCATGCGAATCACTGGAGCATCCGAGTACGTCGCCGTCCAGAAATTAGAGGAATACGGAGGCAATCTCAACGAAGCTGTTAATGCGCATTTCATTGAAGGGGAAAGACACATTCAGGGGCAAAATGTTGCTAATGATGCTGCCCCAAACTATAATTACTCTGATGATAATAACCAAAACCGTGCCGGGTCACGCGGAATTTCGCCTTTTCTCAATGCTGCTAGAAGATTTAGGCCTTCATTGCTACTTGACTCAAATTATAGGAGAGAACTTAGAGATTTGTATACTGGGATGGGTGCTACTGGGCTTACAAGTCGTGGATCGCCGAATGCTTCCTATCCAGGGGAGGTTACGGGTGTCCCTCCCGGGCCTAATATTGCATATGGGTTGCCATATCAATCGGGACTGAACTCTGCAAATGCTGATGTGACTGGGAATTTACCATCTCATGGTCGAGGAGCTTATGGGACAAATGATTATCAGCATGACTACACGTTAGCTCACTCAAACTCCTCAGGTTTTTCTGAGAAAGATGCGGAGGAAGCAATGATTCAAGCTGCGATTGAAGCCTCCAAAAAGGAGAGCAGGGAAGGTTCTTCATGGACTGCTCCTCTTAATGATGGTGTGCTTCCTCAAAGTCATCTTCAACAAGATGATGATTTGGCTCATGCAATTTCATTGTCCTTAAAGACTGCAGAGGAAGAGGAGGCAATACGTGAGCTTCTAGTCGTTGAGGAAAAGGATTTATTAGCCAAGGGAGACAATAGCAGAAGCAGTCTAGAGTCGGGAAAGCCATCCAATCGAAATGTAGCTTCAGGTGTTGCACAACCAGTCATGGGTCATCATGGAAATGAAGACGTATTTATTCCTGAGAAGTGGGCTGGTATTTCCTCTGACGAGCTTAATGAAGCAATGATGCTTGAAACTGCACTTTTTGGTGAAATCCCCAATCGCAGTACTCAGAGATATTCAACTTCGCCTGATCTGCAACCTCGTCCTGAAAAACTTGATCCAAAGATGCAGTGTTCGTCCAGTTCAGCATCACAATTATTAACTGAAACTCAGTTGTTAAGACAACAACAGGATGCTGACTATCAAGCATCACTGCAAGCTGATAAACAAAAGGAATTGAATTCTCTCAAGAAAGCTGAAACCCATTCCTCAAAGGAAGAAGAATCACAGAAAAAGATGATTGAAAAAAAAGATTTGGAGAAAATGCTTGATAAGAAGGAAATTATGCTTCCCAAGGAACCACCATTAGGTGATGAAAAAGTAATTACTATTGTTGTTCGAATGCCAAACGGAAATCGTTGTGAACGCCGCTTCCTCAAAACTGACAAGCTTCAGCTTCTCTTTGATTTCATAGACATTCATGGAGCAGTGAAGCCTGGCTCCTACAGAATTGTAAAATCATACCCGCGATGTGCTTATAGTATTAATGATAGCTCTTCAACCTTGAATGAAGTAGGCCTTAGCAACAAGAACGAGGCTTTGTTTCTGGAGTTAATCTAG 1545 0.4375 MAPPTPDAIAAFMRITGASEYVAVQKLEEYGGNLNEAVNAHFIEGERHIQGQNVANDAAPNYNYSDDNNQNRAGSRGISPFLNAARRFRPSLLLDSNYRRELRDLYTGMGATGLTSRGSPNASYPGEVTGVPPGPNIAYGLPYQSGLNSANADVTGNLPSHGRGAYGTNDYQHDYTLAHSNSSGFSEKDAEEAMIQAAIEASKKESREGSSWTAPLNDGVLPQSHLQQDDDLAHAISLSLKTAEEEEAIRELLVVEEKDLLAKGDNSRSSLESGKPSNRNVASGVAQPVMGHHGNEDVFIPEKWAGISSDELNEAMMLETALFGEIPNRSTQRYSTSPDLQPRPEKLDPKMQCSSSSASQLLTETQLLRQQQDADYQASLQADKQKELNSLKKAETHSSKEEESQKKMIEKKDLEKMLDKKEIMLPKEPPLGDEKVITIVVRMPNGNRCERRFLKTDKLQLLFDFIDIHGAVKPGSYRIVKSYPRCAYSINDSSSTLNEVGLSNKNEALFLELI* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1954 514 Pfam UBA-like domain 7 46 - -
Lja3g1954 514 SMART uim 227 246 IPR003903 -
Lja3g1954 514 SMART uim 190 209 IPR003903 -
Lja3g1954 514 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 190 209 IPR003903 -
Lja3g1954 514 Pfam UBX domain 433 512 IPR001012 GO:0005515
Lja3g1954 514 PANTHER FAS-ASSOCIATED PROTEIN 1 514 - -
Lja3g1954 514 CDD UBX 438 512 - -
Lja3g1954 514 SUPERFAMILY UBA-like 4 42 IPR009060 GO:0005515
Lja3g1954 514 SMART ubx_3 429 513 IPR001012 GO:0005515
Lja3g1954 514 MobiDBLite consensus disorder prediction 329 359 - -
Lja3g1954 514 ProSiteProfiles UBX domain profile. 432 510 IPR001012 GO:0005515
Lja3g1954 514 SUPERFAMILY Ubiquitin-like 423 508 IPR029071 -
Lja3g1954 514 MobiDBLite consensus disorder prediction 266 284 - -
Lja3g1954 514 MobiDBLite consensus disorder prediction 263 294 - -
Lja3g1954 514 MobiDBLite consensus disorder prediction 389 408 - -
Lja3g1954 514 Gene3D - 5 45 - -
Lja3g1954 514 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 9 ISOFORM X1 1 514 - -
Lja3g1954 514 CDD UBA_Ubx1_like 6 42 - -
Lja3g1954 514 Gene3D - 433 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1954 Lja-Chr3 22458236 22465241 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1954 - K18726 gmx:100795740 572.392