Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1953 ATGGACGGTGACGACGAGACATCGGGCCCGATGATCGACGAGATCTACGCCAACGGCGGCGACGACAGCGACAACCGGAGCCGGCGAGCGATCATGAGCGGCGACCAGCTCGACATCGAGGCGTACGCAGGGCTTTACTCGGGGCGCACGAAGATCATGCGGCTTCTCTTCATCGCCGATGCCAACAAGAACCCCACGGTGCAGCTTGAGGCGCTTCGCATGGCCTATGATGAGATTAAGAAGGGTGAGAACACCCATCTCTTCAGGGAAGTCGTGAAGAAGATCGATGGCAAGTTGGGACCTAACTACAACATGGATTCGGCTTGGTGCGATGCGTTTGATCGTAGGGCTGAGCAGAAGAGGGAGAAGCTTGAAAACGAACTCAATGCATATAGGACGAACCTGATTAAAGAAAGCATAAGAATGGGATACAATGATTTAGGAGACTTTTACTATGCCCATGGTCAATTAGGGGATGCTTTTAAAAGTTATGTCCGTACCCGGGATTATTGCACTACATCAAAGCACATCATCCATATGTGTATGAGTGCAATTTTGGTCAGCATTGAGATGGGTCAATTTTCTCATGTCTCAAGCTATGTTAGCAAGGCAGAACAGACACCTGAGGGCCTTGACCCAATAACAGTTTCCAAGCTACGATGTGCTGCAGGCTTAGCAAATCTGGAGGCCAAAAAGTATAAGCTTGCTGCTCGAAAGTTTCTAGAAACAGGCCCAGAACTGGTTAATCACTACAATGAAGTAATTGCACCTCAAGATGTTGCAACATATGGGGGACTTTGTGCACTTGCAACATTTGATCGGGCAGAGTTGAAGGCGAAAGTTATTGACAATTCCAACTTTCGGAATTTCTTAGAGTTAGTACCTGAAGTAAGGGAACTGGTAAATGATTTTTACTCGAGCCACTATGCTTCATGTCTGGAATACCTTGGGAACCTCAAAGCAAACCTATTGCTTGATATACATTTGCATGACCATGTTGAGACACTTTATGATCAAATTCGTCACAAAGCTCTTATCCAGTATACACTCCCATTTGTGTCTGTTGATTTGAACATGATGGCTGACGCATTCAAAACAACTGTTGTTGGACTTCAGAAAGAACTTGAAGCATTGATTACTGATAATCAGATACAGGCTCGAATTGATTCACACAACAAAATTTTGTATGCACGGCATGCTGATCAGAGGAATGCTACCTTCCAAAGGGTTCTAGATACCGGAAGGGAATTTGATCGTGATGTTCGTTCCATGTTACTGAGAGCAAATCTTATCAAGCATGATCACAACCTTAGGGCATTAAGGAAACTTTGA 1332 0.452 MDGDDETSGPMIDEIYANGGDDSDNRSRRAIMSGDQLDIEAYAGLYSGRTKIMRLLFIADANKNPTVQLEALRMAYDEIKKGENTHLFREVVKKIDGKLGPNYNMDSAWCDAFDRRAEQKREKLENELNAYRTNLIKESIRMGYNDLGDFYYAHGQLGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFSHVSSYVSKAEQTPEGLDPITVSKLRCAAGLANLEAKKYKLAARKFLETGPELVNHYNEVIAPQDVATYGGLCALATFDRAELKAKVIDNSNFRNFLELVPEVRELVNDFYSSHYASCLEYLGNLKANLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLNMMADAFKTTVVGLQKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLDTGREFDRDVRSMLLRANLIKHDHNLRALRKL* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1953 443 Pfam PCI domain 296 397 IPR000717 -
Lja3g1953 443 Pfam 26S proteasome subunit RPN7 106 280 IPR045135 -
Lja3g1953 443 SMART PINT_4 331 414 IPR000717 -
Lja3g1953 443 MobiDBLite consensus disorder prediction 1 26 - -
Lja3g1953 443 Gene3D - 35 381 - -
Lja3g1953 443 PANTHER 26S PROTESOME SUBUNIT 6 1 437 IPR019585 -
Lja3g1953 443 Coils Coil 110 141 - -
Lja3g1953 443 ProSiteProfiles PCI domain profile. 229 402 IPR000717 -
Lja3g1953 443 SUPERFAMILY "Winged helix" DNA-binding domain 326 406 IPR036390 -
Lja3g1953 443 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 331 414 - -
Lja3g1953 443 PANTHER BNAA09G38820D PROTEIN 1 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1953 Lja-Chr3 22451577 22455776 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1953 K12175 - gmx:100782579 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1953 3 22451577 22455776 Lja3g1953 3 22451577 22455776 ECH