Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1949 ATGGGGTTAAGCTCACGTACTCTAGAGATCACCGTTATATCTGGCGAAAACCTCCGCGTAACCGACGACGCCTACGTCGTCGTTCGGGGGGAGTCTCTTAACTGCTGCACCACGAGGACGGTGAAGGATAGCGGTGAAGGTGACAAAAACAATAGCAACTCGAGTTTGCTTTCGTGGAATGAGAAGTTCTTGCTGGACATGCCGGCGCATGCGAGGTCCATCACGTTCGAGGTGCAGTGCGGGAAGTTTAAAGGTGTTCGGCCGGTTGGGGTGGCAAGGATAGCGGTTTCGGATTTTCTGGGCGGCGATGTGCCGGATAGTTGCTTGCGGGTGTTGAGTTATAGGTTGAGGGACTGGGAAGGGAAGCAGAATGGGGTGCTTCATTTTGCGGTGAGGGTGGTGGTGCCGGAGAGATCATGTAAGATTTCGGCTGCGGAACAAATGAAGGAAATGGTGCCAAAATTAGATATATACATACACATTCATTTTTGTGCACTACATAACTTGATTAAATTTTCTGCTATGGGTATAAGCTCACGTACTCTAGAGATCACCGTTATATCTGGCGAAAACCTCCGCGTAACCGACGACGCCTACGTCGTCGTTCGGGGGGAGTCTCTTAACTGCTGCACCACGAGGACGGTGAAGGATAGCGGTGAAGGTGACAAAAACAACCGCAATTCGAGTTTGCTTTCGTGGAATGAGAAGTTCTTGCTGGACATGCCAGCGCATGCGAGGTCCATCACGTTTGAGGTGCAGTGCGGGAAGTTCAAAGGTGTTCGGCCGGTTGGGGTGGCAAGGATAGCGGTTTCGGATTTTCTGGGCTGCGATGTGCCGGATAGTTGCTTGAGGGTGTTGAGCTATAGGCTGAGGGACTGGGAAGGGAAGCGGAATGGGGTGCTTCATTTTGCGGTGAGGGTGGTGGTGCCGGAGAGATCGTGTTCGATTTCTGCGGCGGAACAAATGAAGGAAATGGTGCCAAAAAAGCGGTTAAAGAAAACAATAAAAGAAGGTTTACGTAGGTGA 1026 0.5117 MGLSSRTLEITVISGENLRVTDDAYVVVRGESLNCCTTRTVKDSGEGDKNNSNSSLLSWNEKFLLDMPAHARSITFEVQCGKFKGVRPVGVARIAVSDFLGGDVPDSCLRVLSYRLRDWEGKQNGVLHFAVRVVVPERSCKISAAEQMKEMVPKLDIYIHIHFCALHNLIKFSAMGISSRTLEITVISGENLRVTDDAYVVVRGESLNCCTTRTVKDSGEGDKNNRNSSLLSWNEKFLLDMPAHARSITFEVQCGKFKGVRPVGVARIAVSDFLGCDVPDSCLRVLSYRLRDWEGKRNGVLHFAVRVVVPERSCSISAAEQMKEMVPKKRLKKTIKEGLRR* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1949 341 CDD C2_SRC2_like 7 129 IPR044750 GO:0006952
Lja3g1949 341 PANTHER INGRESSION PROTEIN FIC1 5 152 - -
Lja3g1949 341 PANTHER INGRESSION PROTEIN FIC1 179 335 - -
Lja3g1949 341 Pfam C2 domain 7 103 IPR000008 -
Lja3g1949 341 Pfam C2 domain 181 272 IPR000008 -
Lja3g1949 341 PANTHER BON1-ASSOCIATED-LIKE PROTEIN 5 152 - -
Lja3g1949 341 PANTHER BON1-ASSOCIATED-LIKE PROTEIN 179 335 - -
Lja3g1949 341 SMART C2_3c 7 108 IPR000008 -
Lja3g1949 341 SMART C2_3c 181 282 IPR000008 -
Lja3g1949 341 Gene3D C2 domain 177 337 IPR035892 -
Lja3g1949 341 Gene3D C2 domain 4 157 IPR035892 -
Lja3g1949 341 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 133 IPR035892 -
Lja3g1949 341 CDD C2_SRC2_like 181 303 IPR044750 GO:0006952
Lja3g1949 341 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 181 309 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1949 Lja-Chr3 22367615 22380297 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1949 - - gmx:100810797 207.994