LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g1945	ATGGCTACTTCCTGTTCAGCTTCATTCGCCGGCTTCTCCATCATCTCAAGACCTTCTCCTCAACCCAAATTCATCCTCTTCAACATCCCTCCTCGAACCACAACCCTCCACCACCGAACCGGCACGTCCCGGTTCACATGCTCCGCCGGCCCGACCGGATTCTTCACGAAACTGGGCCGGTTGTTGAAGGAGAAGGCAAAGAGCGATGTGGAGAAGTTATTCTCTGGTTTCTCCAAAACCCGCAGCAACCTCGCCGTCGTCGACGAGCTACTTCTCTACTGGAACCTCTCCGACACCGACCGAGTCCTCGACGAACTCGAAGAGGCTCTTTTAGTGTCTGATTTTGGTCCAAGAATCACTGTAAAGATAGTGGAGAATTTGCGTGTGGACATTTTGTCAGGGAAGCTCAAATCAGGGGCTGAGATAAAGGAAGCACTGAAGAAGAATGTTTTGGAGTTGTTGACAACTAAGGGGAGTAAGACTGAACTTCAACTTGGATACAGGAAGCCGGCTGTAATAATTATAGTTGGTGTTAATGGTGGTGGGAAGACAACATCTTTAGGAAAGCTGGCATATAGATTGAAGAATGAAGGAGCCAAGATATTGATGGCAGCTGGTGATACATTCAGAGCAGCTGCTAGTGATCAGCTGGAAATATGGGCTGAAAGGACTGGGTGTGAGATTGTCGTGGCTGAAACTGAGAAAGCCAAAGCATCGTCAGTGCTTTCACAGGCTGTCAAAAAAGGAAAAGAGCTAGGTTATGACATTGTATTATGTGATACATCTGGACGTTTACACACTAATTACAGCCTAATGGAAGAGTTGATTTCTTGTAAAAAGGCTGTTGCTAAAGTAGTTCCTGGCGCACCAAACGAGATCCTACTGGTTCTGGATGGGACTACTGGTTTGAATATGTTGCCACAAGCAAGAGAATTTAATGAAGTTGTGGGTGTTACTGGTTTAATTTTGACCAAACTGGATGGTTCTGCTAGAGGTGGCTGTGTGGTTAGTGTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTGGGTGTTGGAGAAGGTGTTGAAGACCTTCAGCCCTTCGATGCAGAGACTTTTGTCAATGCCATTTTTATGTAA	1119	0.4611	MATSCSASFAGFSIISRPSPQPKFILFNIPPRTTTLHHRTGTSRFTCSAGPTGFFTKLGRLLKEKAKSDVEKLFSGFSKTRSNLAVVDELLLYWNLSDTDRVLDELEEALLVSDFGPRITVKIVENLRVDILSGKLKSGAEIKEALKKNVLELLTTKGSKTELQLGYRKPAVIIIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAETEKAKASSVLSQAVKKGKELGYDIVLCDTSGRLHTNYSLMEELISCKKAVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAETFVNAIFM*	373

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g1945	372	Gene3D	-	162	372	IPR027417	-
	Lja3g1945	372	SUPERFAMILY	Domain of the SRP/SRP receptor G-proteins	70	147	IPR036225	-
	Lja3g1945	372	ProSitePatterns	SRP54-type proteins GTP-binding domain signature.	345	358	IPR000897	GO:0005525\|GO:0006614
	Lja3g1945	372	Pfam	SRP54-type protein, helical bundle domain	99	148	IPR013822	GO:0005525\|GO:0006614
	Lja3g1945	372	TIGRFAM	ftsY: signal recognition particle-docking protein FtsY	99	371	IPR004390	GO:0006614
	Lja3g1945	372	CDD	FtsY	171	370	-	-
	Lja3g1945	372	SMART	SRP54_3	170	372	IPR000897	GO:0005525\|GO:0006614
	Lja3g1945	372	PANTHER	BNAA04G26420D PROTEIN	24	371	-	-
	Lja3g1945	372	Pfam	SRP54-type protein, GTPase domain	170	371	IPR000897	GO:0005525\|GO:0006614
	Lja3g1945	372	SMART	AAA_5	169	342	IPR003593	-
	Lja3g1945	372	PANTHER	SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA	24	371	-	-
	Lja3g1945	372	Gene3D	-	60	161	IPR042101	-
	Lja3g1945	372	SMART	SRP54_N_2	73	154	IPR013822	GO:0005525\|GO:0006614
	Lja3g1945	372	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	167	370	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g1945	Lja-Chr3	22339609	22345158	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g1945	K03110		-	gmx:100791073	651.744

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja3g1945	3	22339609	22345158	Lja3g1945	3	22339609	22345158	ECH