Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1935 ATGGAAGAGGCTACACAAAGGTATGCAGTTGTGACTGGAGCAAACAAAGGAATTGGATTAGAGATAGTTAAGCAGTTAGCTTCAGTTGGGATCAAGGTGGTGCTTACAGCAAGAGACCAGAGGAAGGGTCTTCAAGCTTTGAAAACACTCAAGGACTCTGGTTTGTCTGACCTTGTAGTTTTTCATCAACTAGATGTGGCTGATGCTGCAAGTGTAGCTTCTCTGGCAGATTTTGTTGAATCTAAATTTGGGAAACTTGATATTCTGGTGAACAATGCAGGGATTAGTGGAATTGTAATTAAAGATGATGATCTATACAAGTTAGCTATCTATGACCTTGGGGCGTTATCAGAAGATGACCGGAATAAAGGGATTCCTCAAACGTATGAGTTAGCTGAAGAATGCTTGCAAACAAATTATTATGGTGCTAAAATAACTACGGAGTCCCTTCTACCCCTCCTACACTTATCTGATTCGCCAAGAATTGTGAATGTATCATCTTTCCTGGGGAAGTTAGAGTGTGTACCAAATGGATGGGCCAAAGGAGTATTGAGTGATGCTGATAATCTAACCGAAGAGACAGTGGATGGAGTATTGAAAAAGTTTCTCCAAGATTTCCAAGATGGTTCATTAGAAGGCAAAGGGTGGCCTAAGATTTTCAGTGCCTATATTATGTCTAAAGCTGCTATGAATGCCTATACAAGAATTCTTGCCAGGAAATACCCCACTTTCTGCATCAACAGTGTTTGTCCTGGCTGGGTCAAGACAGATATAACTGCCAATAATGGCTTGTTAACTGTTGAAGAAGGTGCTGCTACTCCTGTGAGGCTAGCGCTGCTTCCCAATGGAAGTCCATCTGGCCTCTTCTATCACCGGGGAGAAAAGTCAAGAAGATCCAACCATTTGAAGATCAAAAGGGCTAAAAATATTGAAGTCCGCTTAAGCCAAATGTTTCCTCACTTAAGCCAAATTACATGGCAGTAG 984 0.4157 MEEATQRYAVVTGANKGIGLEIVKQLASVGIKVVLTARDQRKGLQALKTLKDSGLSDLVVFHQLDVADAASVASLADFVESKFGKLDILVNNAGISGIVIKDDDLYKLAIYDLGALSEDDRNKGIPQTYELAEECLQTNYYGAKITTESLLPLLHLSDSPRIVNVSSFLGKLECVPNGWAKGVLSDADNLTEETVDGVLKKFLQDFQDGSLEGKGWPKIFSAYIMSKAAMNAYTRILARKYPTFCINSVCPGWVKTDITANNGLLTVEEGAATPVRLALLPNGSPSGLFYHRGEKSRRSNHLKIKRAKNIEVRLSQMFPHLSQITWQ* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1935 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 223 242 IPR002347 -
Lja3g1935 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Lja3g1935 327 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Lja3g1935 327 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 284 IPR036291 -
Lja3g1935 327 PRINTS Glucose/ribitol dehydrogenase family signature 223 242 IPR002347 -
Lja3g1935 327 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Lja3g1935 327 PRINTS Glucose/ribitol dehydrogenase family signature 154 170 IPR002347 -
Lja3g1935 327 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Lja3g1935 327 PRINTS Glucose/ribitol dehydrogenase family signature 242 259 IPR002347 -
Lja3g1935 327 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 294 - -
Lja3g1935 327 Pfam short chain dehydrogenase 8 172 IPR002347 -
Lja3g1935 327 Gene3D - 2 298 - -
Lja3g1935 327 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 7 294 - -
Lja3g1935 327 CDD carb_red_PTCR-like_SDR_c 7 294 IPR045313 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1935 Lja-Chr3 22269545 22273819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1935 9 260 Miscellaneous Gene Families AT2G29150 27.059 2.72e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1935 K15095 - gmx:100801677 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1935 3 22269545 22273819 Lja3g1935 3 22269545 22273819 ECH