LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g1932	ATGGAAGAAGCTACACAGAGGTATGCAGTTGTGACTGGAGCTAATAAAGGAATTGGATTAGAGATAGTTAAGCAGTTAGCTTCAGTTGATATCAAGGTTGTGCTAACAGCAAGAGATGAGAAGAGGGGTCTTCAAGCTTTGGAAACACTCAAGGACTCAGGTTTATCTGACCTTGTGGTTTTTCATCAACTAGATGTGGCTGATGCTGCAAGTGCAGCATCTCTGGCAGATTTTGTCAAATCCAAATTTGGGAAACTTGATATTCTGGTGAACAATGCAGGAATTGGTGGAGCTGTAATTAAAGACAATAATTTATACAACTTAGCTATCTTTAACATTGTGGAGTTATCAGAAGATGAGCAGAATAAGGCAATCCCTCAAACATATGAGTTAGCTGAAGAATGCTTGCAAACAAATTATTATGGTGCTAAAATCACTACTGAGTCCCTTCTACCTCTCCTACACTTATCTGATTCACCAAGAATTGTGAATGTATCATCCTCCTTGGGGCAGTTAGAGTGTGTAAAAAAAGAATGGGCTAAAGGAGTCTTTAGTGATGTTGATAATCTTACAGAAGAGACAGTGGATGGAGTATTGAAAAGGTTTCTGAAAGATTTCCAACAAGGTTCATTAGAAAGCAAAGGTTGGCCTAAGATTTTCAGTGCCTATATTGTGTCTAAAGCTGCTATGAATGCCTATACAAGAATTCTTGCCAGGAAATACCCCACTTTCTGCATCAATAGTGTTTGCCCTGGATTTGTCAAGACAGATATAACTGCCAATAATGGCTTGTTAACTGTTGAAGAAGGTGCTGCTAGTCCTGTAAGGCTAGCACTGTTTCCTAATGGAAGCCCATCTGGCCTCTTCTATCACAGGGGTGAAGTGTATGCAGTTGTGACTGGAGCTAATAAAGGAATTGGATTAGAGATAGTTAAGCAGTTAGCTTCAGTTGGGATCAAAGTGGTGCTTACAGCAAGAGATCAGAAGAGGGGTCTTCAAGCTTTGGAAACACTCAAGGACTCTGGTTTGTCTGACCTTGTAGTTTTTCATCAACTAGATGTGGCTGATGCTGCAAGTGTAGCTTCTCTGGCAGATTTTCTCAAATCAGAATTTGGGAAACTTGATATTCTGGTGAACAATGCAGGGATTGGTGGAATTGTAATTGAAGACAGTGGTTTGCTCAATTTAGCAATCATTAGCGGTGGGGCGTTATCAGAAGATGATGGGAGAAAGGCAGCCACTCAAACATTTGAGTTAGCTGAAGACTGCTTGCAAACAAATTATTATGGAACCAAAATCACTACTGAATCCCTTCTACCCCTCCTACACTTGTCTGATTCACCAAGAATTGTGAATGTATCATCTTTCCTGGGGCAGTTACAGTGTGTACCAAATGGATGGGCTAAAGGAGTCTTGAGTGATGCTGATAATCTTACAGAAGAGACATTGGATGGAGTATTGAAAAAGTTTCTCAAAGATTTTCAAGAAGGTTCATTAGAAAGTAATGGGTGGCCTAAGCTTTTCAGTGCCTATATCATGTCGAAAGCTACCATAATTGCCTATACTAGAATTCTTGCCAGGAAATACCCCACTTTCAGCATCAATAGTGTTTGCCCTGGTTATTGCAAGACAGATATAACTGCCAATAATGGTTTGTTAACTGCTGAAGAAGGTGCTGCTAATCCTGTGAAGCTAGCACTGCTTCCAAATGGAAGTCCATCTGGCTTCTTCTATTCCCAGGGTGAAGTGTCATCCTTTTGA	1761	0.4043	MEEATQRYAVVTGANKGIGLEIVKQLASVDIKVVLTARDEKRGLQALETLKDSGLSDLVVFHQLDVADAASAASLADFVKSKFGKLDILVNNAGIGGAVIKDNNLYNLAIFNIVELSEDEQNKAIPQTYELAEECLQTNYYGAKITTESLLPLLHLSDSPRIVNVSSSLGQLECVKKEWAKGVFSDVDNLTEETVDGVLKRFLKDFQQGSLESKGWPKIFSAYIVSKAAMNAYTRILARKYPTFCINSVCPGFVKTDITANNGLLTVEEGAASPVRLALFPNGSPSGLFYHRGEVYAVVTGANKGIGLEIVKQLASVGIKVVLTARDQKRGLQALETLKDSGLSDLVVFHQLDVADAASVASLADFLKSEFGKLDILVNNAGIGGIVIEDSGLLNLAIISGGALSEDDGRKAATQTFELAEDCLQTNYYGTKITTESLLPLLHLSDSPRIVNVSSFLGQLQCVPNGWAKGVLSDADNLTEETLDGVLKKFLKDFQEGSLESNGWPKLFSAYIMSKATIIAYTRILARKYPTFSINSVCPGYCKTDITANNGLLTAEEGAANPVKLALLPNGSPSGFFYSQGEVSSF*	587

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g1932	586	Gene3D	-	296	586	-	-
	Lja3g1932	586	Gene3D	-	2	295	-	-
	Lja3g1932	586	PANTHER	SHORT-CHAIN DEHYDROGENASE/REDUCTASE	7	294	-	-
	Lja3g1932	586	PRINTS	Glucose/ribitol dehydrogenase family signature	223	242	IPR002347	-
	Lja3g1932	586	PRINTS	Glucose/ribitol dehydrogenase family signature	84	95	IPR002347	-
	Lja3g1932	586	PRINTS	Glucose/ribitol dehydrogenase family signature	154	170	IPR002347	-
	Lja3g1932	586	PRINTS	Glucose/ribitol dehydrogenase family signature	242	259	IPR002347	-
	Lja3g1932	586	PRINTS	Glucose/ribitol dehydrogenase family signature	8	25	IPR002347	-
	Lja3g1932	586	PANTHER	(+)-NEOMENTHOL DEHYDROGENASE	296	586	-	-
	Lja3g1932	586	PANTHER	(+)-NEOMENTHOL DEHYDROGENASE	7	294	-	-
	Lja3g1932	586	CDD	carb_red_PTCR-like_SDR_c	296	586	IPR045313	GO:0016616
	Lja3g1932	586	Pfam	short chain dehydrogenase	8	172	IPR002347	-
	Lja3g1932	586	Pfam	short chain dehydrogenase	297	460	IPR002347	-
	Lja3g1932	586	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	297	572	IPR036291	-
	Lja3g1932	586	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	223	242	IPR002347	-
	Lja3g1932	586	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	160	168	IPR002347	-
	Lja3g1932	586	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	84	95	IPR002347	-
	Lja3g1932	586	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	7	284	IPR036291	-
	Lja3g1932	586	PANTHER	SHORT-CHAIN DEHYDROGENASE/REDUCTASE	296	586	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g1932	Lja-Chr3	22203773	22224643	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g1932	297	386	Miscellaneous Gene Families	AT2G29150	38.462	8.34e-08	52.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g1932	K15095		-	jre:109004875	686.797