Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1928 ATGACTACACAATCCTTGTTTCTTCTTCTCCTTGTTTCCATTTTAGCATCACATTCCAATGCTTACCCTCTTTCAACCCAAGGCAGATGGATCATAGATGAATCCACAGGGCAAAGAGCCAAACTTGTGTGTGCTAACTGGGCTGGTCACCTTCAGCCAATGATCCCTGAGGGTCTAGACAGAAGGCCATTGAAGGAGATTGTTTCTGAGCTTGTCAAACACAAATTCAACTGCGTTCGCCTCACCTATGCAATTTACATGTGGACACGCTATGGCGGTCACATTGTGAGTGGCACCTTCGATGGTTTGGATGTGCCGGAGGTCTTTGAAGCTGTGGTTCATGAACTTGGTGCACAAAATGTGAAAGCTTTGCTTGATAACCATGTTAGTGAGCCAAAATGGTGCTGTAATGATGATGATGAGAATGGATTCTTTCATGACAGACACTTTGATCCTCAGGAGTGGGTGCAGGGCCTTACTCTGGCAGCCAAGCACTTTGCAGGACATCACCCCGTTGTGGCAATGAGCTTGAGGAATGAATTGCATGGTCCACGCCAAAATCTGAATGATTGGTACAAGTACATGAGCCAAGCAGCACTGGCCATCCATAAATCAAATCCAAATGTGCTTGTGCTGATCTCAGGTTTGAACTATGACACTGAGTTGCAGTTTTTAAGGAACAAACCATTGAAGATTGACTTGGGTAAAAAATTGGTCTATGAGACACATTTGTACTCATGGTCTGGAATTGAAACACTCAAATTGAAAGAGATTTGGACCAAGCAACCATTGAACAGGATATGCTCCCAGAGCATTGAGGGGATAGACTACAGAGCTGGGTTCCTTACCAGTGGTAAGAATGCAGCTCCTTTAATCTTCACTGAGTTTGGGTTTGACCAAACAGGTTCTTCAGTGGAAGACAACAGGTTCTTGACATGCCTTCAAACTTATCTTCTTGGAAGAGACTTGGATTGGGGTTTGTGGGCATTTCAAGGTGACTATTACATTAAACAGGACAATGTTCAAGTTCAGGAGACATTTGGTGTACTGGATACCACTTGGCACAATCTGAGATACCCAAATTTCACTGCCAAGTTCCAACTTTTGCAAAGGAAGAATCAAGATCCTACTTCAAAAGCCCCCAATGCATATATCTTGTACCATCCACTAACTGGTCAATGTGTCAAAGTGAATAACAAGAATGAACTTGAAGTTGGTAGCTGTGAGAAGCCAAAAAGATGGGTTTATGGTGGAGATAGGTCTCAGGTTCTTTTGCATGATAACAAGAAGTGCATAACTGCATCTGGTGAAGGGCTTCCAGTTTCTGTTTCTGATGAGTGCCAGAGCAAGATCAGTTCTTGGAAATCTGTGTCCCTTTCTAAGCTTCATTTGGCTACTAAGGATAAAGATGGGAAACAACTTTGCTTGCAGAAGGATTCCAATTCATCCAGGATTTTGACTTCAAAATGTATCTGCATAGATGATGATTCTCAATGTCTGAATGATCCCCAAAGCCAGTGGTTCCAGCTTGTTGCCACTAATGTTTAG 1548 0.4296 MTTQSLFLLLLVSILASHSNAYPLSTQGRWIIDESTGQRAKLVCANWAGHLQPMIPEGLDRRPLKEIVSELVKHKFNCVRLTYAIYMWTRYGGHIVSGTFDGLDVPEVFEAVVHELGAQNVKALLDNHVSEPKWCCNDDDENGFFHDRHFDPQEWVQGLTLAAKHFAGHHPVVAMSLRNELHGPRQNLNDWYKYMSQAALAIHKSNPNVLVLISGLNYDTELQFLRNKPLKIDLGKKLVYETHLYSWSGIETLKLKEIWTKQPLNRICSQSIEGIDYRAGFLTSGKNAAPLIFTEFGFDQTGSSVEDNRFLTCLQTYLLGRDLDWGLWAFQGDYYIKQDNVQVQETFGVLDTTWHNLRYPNFTAKFQLLQRKNQDPTSKAPNAYILYHPLTGQCVKVNNKNELEVGSCEKPKRWVYGGDRSQVLLHDNKKCITASGEGLPVSVSDECQSKISSWKSVSLSKLHLATKDKDGKQLCLQKDSNSSRILTSKCICIDDDSQCLNDPQSQWFQLVATNV* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1928 515 Gene3D Glycosidases 21 372 - -
Lja3g1928 515 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 3 515 - -
Lja3g1928 515 SUPERFAMILY (Trans)glycosidases 21 359 IPR017853 -
Lja3g1928 515 Pfam Cellulase (glycosyl hydrolase family 5) 63 329 IPR001547 GO:0004553|GO:0071704
Lja3g1928 515 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS HYDROLASE 3 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1928 Lja-Chr3 22173491 22175662 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1928 21 511 Glycoside Hydrolase AT1G13130 37.791 6.21e-129 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1928 K01179 - gmx:100811735 551.206