Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1924 ATGGACTTATATTTTCTTAGTTATTTTTTCGGTTTGAACCACATGTATGCGGTTGTGACAGGAGCAAACAAGGGAATAGGATTTGCAATATGCAAGCAATTGGCTTCCAATGGTATCACTGTGGTGCTGACAGCAAGAGATGAGAAGCGGGGTCTTGAAGCTATTGAGAAACTCAAAGGGCTTGGTCTTCTTGGCCATGTGGTTTTTCATCAACTTGATGTCACTGATCCTGCAAGTATAGGATCATTTGCACATTTCATCCAGGCCCACTTTGGAAAACTTAATATCTTGGTAAACAACGCTGGAGCCCCAGGAGCACATATAGACGGTGAGGCTTTGGCTGCTGCAAATATTGTGGAAAACAGAGACCGTATAGATTGGAGTAAAATAGTTACTGAAAACTATGAATTAACTGAAGCATGTCTTAAAACAAACTACTATGGAGTAAAGGAATTGACCAAAGCACTAATTCCCCTTCTCCAGTTTTCAGGCTCACCCAAAATTGTCAATGTTTCTTCATCCAGTGGAAGGCTTGAGTATATGCCAGATGGAAGGCCTAAAGAAGTGATAAGTGATGTTGAAAACCTCACAGAAGAAAAGATTGATGAGATTTTGAATGAATTTCTAAAGGATTTTAAAGAGGGTTCCCTAGAAACCAAAGGGTGGCCTCATAGTATGTCTGCATATACAATCTCAAAAGCTGCTCTGAATGCCTACACAAGGATTCAGGCCAAGAAATACCCTTCATTCTGCATCAATGATGTTTGCCCTGGTTATGTCAAAACGGATATTAATCAGAATACTAGTTTTCTAACACCTGATGAAGGTGCTGAAGCTGTCGTCAGGTTGGCACTGCTATCTAATGGTAATAGTCCTTCTGGACTTTTCTTCTTTCGAAGTGAAGAGAAACCATTTTGA 918 0.402 MDLYFLSYFFGLNHMYAVVTGANKGIGFAICKQLASNGITVVLTARDEKRGLEAIEKLKGLGLLGHVVFHQLDVTDPASIGSFAHFIQAHFGKLNILVNNAGAPGAHIDGEALAAANIVENRDRIDWSKIVTENYELTEACLKTNYYGVKELTKALIPLLQFSGSPKIVNVSSSSGRLEYMPDGRPKEVISDVENLTEEKIDEILNEFLKDFKEGSLETKGWPHSMSAYTISKAALNAYTRIQAKKYPSFCINDVCPGYVKTDINQNTSFLTPDEGAEAVVRLALLSNGNSPSGLFFFRSEEKPF* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1924 305 PRINTS Glucose/ribitol dehydrogenase family signature 160 176 IPR002347 -
Lja3g1924 305 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Lja3g1924 305 PRINTS Glucose/ribitol dehydrogenase family signature 248 265 IPR002347 -
Lja3g1924 305 PRINTS Glucose/ribitol dehydrogenase family signature 229 248 IPR002347 -
Lja3g1924 305 PRINTS Glucose/ribitol dehydrogenase family signature 92 103 IPR002347 -
Lja3g1924 305 Gene3D - 11 305 - -
Lja3g1924 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 IPR002347 -
Lja3g1924 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 174 IPR002347 -
Lja3g1924 305 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 229 248 IPR002347 -
Lja3g1924 305 Pfam short chain dehydrogenase 17 179 IPR002347 -
Lja3g1924 305 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 216 244 IPR020904 GO:0016491
Lja3g1924 305 CDD carb_red_PTCR-like_SDR_c 16 305 IPR045313 GO:0016616
Lja3g1924 305 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 14 305 - -
Lja3g1924 305 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 287 IPR036291 -
Lja3g1924 305 PANTHER (+)-NEOMENTHOL DEHYDROGENASE-RELATED 14 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1924 Lja-Chr3 22147521 22150455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1924 10 275 Miscellaneous Gene Families AT2G29150 26.394 2.51e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1924 K15095 - gmx:100803877 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1924 3 22147521 22150455 Lja3g1924 3 22147521 22150455 ECH