Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1922 ATGTTTCCTCATCCATTGGAAGGCTTGAGGTATGGTTATTTGGAAGTGGTGAAGGCTGAGCACCATCATTTACTATCTCCAAAAGGCCATAAGCTGTATGCGGTTGTGACAGGAGCAAACAAGGGAATAGGATTTGCAATATGCAAGCAATTGGCTTCTGAAGGTATCACTGTGGTGCTGACAGCAAGAGATGAGAAGAGGGGTCTTGAAGCTGTTGAGAAACTCAAAGGGCTTGGTCATGTGATTTTTCATCAACTTGATGTCACTGATCCTGCAAGTATAGGATCATTTACACATTTCATCCAGACCCGTTTTGGAAAGCTCGATATCTTGGTGAACAATGCTGGAATCTCAGGAGCACATGTGGAGGAGAGTGAGGCTTTGGTTGCTGCAAATATTTTGGAAAACGGTGGCCAAATTGATAGTAGAAAAATATTTACTGAAAACTATGAATTAAGTGAAGCATGTCTTAAAACAAATTACTATGGAGTCAAGGAATTAACCAAAGCATTAATTCCCCTTCTCCAGTTTTCAGGCTCCGCCAAAATCGTCAATGTTTCCTCATCCATGGGAAGGCTTGAGAATATGCCAGATGCAAGGCCTAAAGAAGTGCTAAATGATGTTGAAAACCTCACAGAAGAAAAGATTGATGAATTTCTGAGTGAATTTCTAAAGGATTTTAAAGAGGGTTCACTAGAAACCAAAGGGTGGCCTCATAGCGCATCTGCGTATAGAATCTCAAAAGCTGCTCAGAATGCCTACACAAGGATTCTAACCAAGAAATACCCTTTATTCTGCATCAATGCTGTTTGTCCAGGTCATGTGAAAACAGATATTACCTACAATACAGGCCTTCTAACACCTGATGAAGGTGCTGAAGCTGCTGTCAGGTTGGCACTGTTGCCCCATGGTAGTAGTCCTTCTGGCCTTTTCTTCTTTCGAAGTGAAGAGAAACCATTTTGA 963 0.4154 MFPHPLEGLRYGYLEVVKAEHHHLLSPKGHKLYAVVTGANKGIGFAICKQLASEGITVVLTARDEKRGLEAVEKLKGLGHVIFHQLDVTDPASIGSFTHFIQTRFGKLDILVNNAGISGAHVEESEALVAANILENGGQIDSRKIFTENYELSEACLKTNYYGVKELTKALIPLLQFSGSAKIVNVSSSMGRLENMPDARPKEVLNDVENLTEEKIDEFLSEFLKDFKEGSLETKGWPHSASAYRISKAAQNAYTRILTKKYPLFCINAVCPGHVKTDITYNTGLLTPDEGAEAAVRLALLPHGSSPSGLFFFRSEEKPF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1922 320 Pfam short chain dehydrogenase 34 193 IPR002347 -
Lja3g1922 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 34 305 IPR036291 -
Lja3g1922 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 244 263 IPR002347 -
Lja3g1922 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 106 117 IPR002347 -
Lja3g1922 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 189 IPR002347 -
Lja3g1922 320 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 31 320 - -
Lja3g1922 320 CDD carb_red_PTCR-like_SDR_c 33 320 IPR045313 GO:0016616
Lja3g1922 320 Gene3D - 28 320 - -
Lja3g1922 320 PRINTS Glucose/ribitol dehydrogenase family signature 175 191 IPR002347 -
Lja3g1922 320 PRINTS Glucose/ribitol dehydrogenase family signature 244 263 IPR002347 -
Lja3g1922 320 PRINTS Glucose/ribitol dehydrogenase family signature 106 117 IPR002347 -
Lja3g1922 320 PRINTS Glucose/ribitol dehydrogenase family signature 263 280 IPR002347 -
Lja3g1922 320 PRINTS Glucose/ribitol dehydrogenase family signature 33 50 IPR002347 -
Lja3g1922 320 PANTHER (+)-NEOMENTHOL DEHYDROGENASE-RELATED 31 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1922 Lja-Chr3 22137892 22142467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1922 35 199 Acyl Lipid Metabolism Gene Families AT1G24360 25.749 8.09e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1922 K15095 - gmx:100803877 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1922 3 22137892 22142467 Lja3g1922 3 22137892 22142467 ECH