Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1896 ATGGAGCTTGTAAATGATGGAACAGAATCATCAAATGGTGTTGATGAAGCTGAAATTACTAATTCTCCACTTATTCCTGGCCTTCCAGATGATATTTCTCTTGTGTGCCTGGCAAGAGTTCCTAGAAGATATCATCCAGTCCTGAAGTGTGTCTCAAAAAGATGGGGGGGTTTAGTTTGCAGTGAAGAGTGGGTTTATTATCGCAAAAAGCATAAACTTGATGAAACCTGGATCTATGCTTTGTGCAGGGACACATTAGATAAACTTTTATGTTTTGTTCTGGATCCAACCTCCTCAAGAAAATGTTGGAAGCTCATTCGTGGGCTTCCACCTCGCACCATGAAAAGAAAAGGCATAGGTTTTGAAGCTTTGGGAAATAAGCTTTTCTTATTAGGTGGCTGTGGCTGGTCTGAAGGTGTTATTGATGAGGTTTACTCATACAATGCTTCCTTGAACTCTTGGGTTGAAGCTACTTCCTTGTCAACTGCTAGGTGCTTCTTTGCTTGTGAAGTTTTGGATGAAAAACTGTATGCCATTGGTGGCATAGGTCAAAATTCAAGTGATTCTTGGGATACTTTTGACCCTTGCACAAATGGTTGGACATCTCGCAGAGATCCTAATATTATTCCTGAAGTTGAAGATTCAGTAGTTATGGATGGGAAGATATACATCCGATGTGGCAAATATCCTGTAACTCCTCATGTGTATCTTGTGTATGAACCATCAAGCGATACATGGCAGCATGCAGATGCTGACATGGTTTCAGGATGGAGAGGTCCTGCAGCTGTTGTAGAGGGCGTCCTTTTTGTTTTGGATCAGCGTTCGGGTAGTCGGTTAATGATGTGGCATAAAGAGAGACGCGAGTGGATACCTGTTGGAAAGTTGTCACCATTGCTTACAAGACCACCCTGCCAGCTTGCTGCAGTTGGTAAAAGTATTTTTGTTGTTGGGAAAGGGCTTAGCACTGTGGTTGTTGATGTTGGTGATTTGGGGGATGTGGGACGGGTAATGACGGGTTCGTCTATACCCAAATTAGATTCTGATTACGATGTAATTAGTTGTAAATGTTTGGCAATCTGA 1080 0.4222 MELVNDGTESSNGVDEAEITNSPLIPGLPDDISLVCLARVPRRYHPVLKCVSKRWGGLVCSEEWVYYRKKHKLDETWIYALCRDTLDKLLCFVLDPTSSRKCWKLIRGLPPRTMKRKGIGFEALGNKLFLLGGCGWSEGVIDEVYSYNASLNSWVEATSLSTARCFFACEVLDEKLYAIGGIGQNSSDSWDTFDPCTNGWTSRRDPNIIPEVEDSVVMDGKIYIRCGKYPVTPHVYLVYEPSSDTWQHADADMVSGWRGPAAVVEGVLFVLDQRSGSRLMMWHKERREWIPVGKLSPLLTRPPCQLAAVGKSIFVVGKGLSTVVVDVGDLGDVGRVMTGSSIPKLDSDYDVISCKCLAI* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1896 359 Pfam Kelch motif 163 201 IPR006652 GO:0005515
Lja3g1896 359 Gene3D - 66 330 IPR015915 GO:0005515
Lja3g1896 359 SUPERFAMILY Kelch motif 89 320 IPR015915 GO:0005515
Lja3g1896 359 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 10 334 - -
Lja3g1896 359 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 10 334 - -
Lja3g1896 359 Pfam Galactose oxidase, central domain 123 160 - -
Lja3g1896 359 SUPERFAMILY F-box domain 20 64 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1896 Lja-Chr3 21731687 21734396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1896 28 300 Miscellaneous Gene Families AT4G33900 27.090 2.56e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1896 - - pvu:PHAVU_010G098100g 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1896 3 21731687 21734396 Lja3g1896 3 21731687 21734396 ECH