Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1893 ATGTCAGTTATCTGTGGGCTTCCTATACTTGAGTGTGTTTCTTGTCTGGCCTGTTCCCGTTGGGTTTGGAAAAAATGTCGGTACACTGCGGGCTATGAGAGTGAAAATTGGGGCCTGGCTACTGCAGTAGAATTTGAGCACATACCTCGATTTTGTCGTGTAATCTTAGCGGTCTATGAGGACGATATTCGTAACCCCCAATGGGCTCCCAAAGGAGGTTATGGCATTAATCCTGACTGCGTTATCTTGCGTAAGGATTATGGGGATAACGAAGGTTGTGTGACTCCTTACATGATATACCTTGATCATGATCATGCTGAAATTATACTGGCTGTTAGTGGACTTAATTTAGCAAAGGAAAGTGATTATGCAGTTTTGCTTGATAACAAACTGGGCCAGACAGAATTTCATGGTGGTTATGTTCATAATGGGTTATTGAAGGCGGCAGGCTGGGTTTTTGATACAGAATATGAGGTTCTCAGGGAGCTGGTGGCTGAAAATCCAACTTATATGCTCACATTTATTGGACATTCTCTAGGGGCTGGTGTGGTGGCATTATTGACAATGCTAGCCCTTCATAATCGAGACAAATTGGGGATACAGAGAGACAACGTAAGATGTTATGCGATAGCTCCTGCGCGTTGTATGTCTCTCAATTTGGCTGTAAGATATGCGGATGTGATCAGTTCTGTCGTGCTACAGGATGATTTTTTACCTCGGACAACCACCGTGCCTCTAGAAGCTGTCTTCAAGTCACTTTTATGTTGGCCCTGTTTATTATGTCTACTGTGCTTAAAGGACACTTTCACACTGGAGGAGAAGAAACTTAGAGATCCAAGGCGTCTATATGCTCCTGGTCGTCTCTATCACATTGTGGAGCGAAAGCCCTTCAGGTTTGGAAGGTTTCCACCTGTTGTTAGGACAGCGGTGCCTGTTGATGGCAGATTTGATCATGTAGTTCTTTCTTGCAATGCAACTGCTGATCATGCCATCCTTTGGATAGAGAGGGAATCCCAATGGGCTCTCGATTTAATGCTAGAGAATGATCAGCATATGGAGATTCCAGCAGAGCAGAGGATGGAGAGGCAAGAATCTCTAGCTCGAGAACACAGTGAAGAGTACCAAGCAGCCCTTAAGAGGGCAGTTGCTTTGGATATTCCTCAAGCATATTCACCTTCATCATATGGAACATTTCATGAACTGGAAGCTGGGGAGGACTCTGGAAGATCAAGCGGCAAAGGCTCCTCCTTATTCTATAAGAACAGAACAGCAAGTTGGAATGATTTTGTCGGGCGTCTGTTTGATATGGATGACTCAGGTCATATGGTGTTCAAGAAGACACACTCATAA 1350 0.4437 MSVICGLPILECVSCLACSRWVWKKCRYTAGYESENWGLATAVEFEHIPRFCRVILAVYEDDIRNPQWAPKGGYGINPDCVILRKDYGDNEGCVTPYMIYLDHDHAEIILAVSGLNLAKESDYAVLLDNKLGQTEFHGGYVHNGLLKAAGWVFDTEYEVLRELVAENPTYMLTFIGHSLGAGVVALLTMLALHNRDKLGIQRDNVRCYAIAPARCMSLNLAVRYADVISSVVLQDDFLPRTTTVPLEAVFKSLLCWPCLLCLLCLKDTFTLEEKKLRDPRRLYAPGRLYHIVERKPFRFGRFPPVVRTAVPVDGRFDHVVLSCNATADHAILWIERESQWALDLMLENDQHMEIPAEQRMERQESLAREHSEEYQAALKRAVALDIPQAYSPSSYGTFHELEAGEDSGRSSGKGSSLFYKNRTASWNDFVGRLFDMDDSGHMVFKKTHS* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1893 449 Pfam Lipase 3 N-terminal region 10 74 IPR005592 GO:0016042
Lja3g1893 449 Pfam Lipase (class 3) 119 243 IPR002921 GO:0006629
Lja3g1893 449 SUPERFAMILY alpha/beta-Hydrolases 44 243 IPR029058 -
Lja3g1893 449 CDD Lipase_3 44 250 - -
Lja3g1893 449 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 447 - -
Lja3g1893 449 Coils Coil 360 380 - -
Lja3g1893 449 Gene3D alpha/beta hydrolase 39 252 IPR029058 -
Lja3g1893 449 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1893 Lja-Chr3 21702496 21708066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1893 1 449 Miscellaneous Gene Families AT4G00500 65.784 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1893 - - gmx:100800227 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1893 3 21702496 21708066 Lja3g1893 3 21702496 21708066 ECH