Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1890 ATGAATGCAGGAGTGCTTGAAGTACTTCTTGTTAATGCTAAAGGCATAAAGCACACAAACCTTGTTGGAACACCTTCCTACTATGTGGTTATTGAGTGCGGAACTCAATCCCAGAGAAGCAAAGTTTCATCAGGCAAACATGAGAAACCTTGGTGGAATGAGAAATTCATTTTTGATTTGTCAACGTTTGATTGCAAGAACTCAACCCATCTTAATCTTAAGTGCAGAATCATGGACACAAGACTCTTCACAAATGGTGGATTTGTTGGTGAAGCAGAGATTTACATTGGTGGAATAATCAGCGAAGGGAATGAGCGGGGATATATAGAAATAAAACCATCTGCATACAATGTTGTCCTTGAAGATGACACCTATAAGGGACAGATCAAGATTGGATTTAAATTCTTCGCAAAAAAGGAAAAGTACGTGATAGAGAAAGGAGAATTCATTGCTGAGGAGAAGAAGGAACCAAGTCATTCAATTTGTGGATCCATTTGGAGAATACCATGGTGGAAAGTGTTGTTTTTTTATAATAAAACGAGTTCCAAAGAAAAACAAAAGAGAAATTAG 570 0.3737 MNAGVLEVLLVNAKGIKHTNLVGTPSYYVVIECGTQSQRSKVSSGKHEKPWWNEKFIFDLSTFDCKNSTHLNLKCRIMDTRLFTNGGFVGEAEIYIGGIISEGNERGYIEIKPSAYNVVLEDDTYKGQIKIGFKFFAKKEKYVIEKGEFIAEEKKEPSHSICGSIWRIPWWKVLFFYNKTSSKEKQKRN* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1890 189 SMART C2_3c 5 108 IPR000008 -
Lja3g1890 189 Gene3D C2 domain 2 137 IPR035892 -
Lja3g1890 189 Pfam C2 domain 5 107 IPR000008 -
Lja3g1890 189 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 137 IPR035892 -
Lja3g1890 189 PANTHER C2 DOMAIN-CONTAINING 1 188 - -
Lja3g1890 189 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 188 - -
Lja3g1890 189 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1890 Lja-Chr3 21671803 21673030 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1890 - - gmx:100782233 302.367