Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1886 ATGCATAGGTATCATGCTGGCAGCTGCACTAGTGCAGTTAATAACAATAAAATAGGCGGACCATCTGCTAGGGACACTGGAAGATCCGATTCATCTTCTTTGCCAGCTAACTTCCCTGTAAGTTCAAGGCGACAACCACCGCTAAACCCATACAAGTTGAAGTGTGATAGAGAACCTTTGAACTCTAGGCTTGGGGCCCCAGATTTTCTTCCCCAAACACCAAATTGTCCTGAGGAGACTCTGACCAGAGAGTATTTGCAATCTGGATACAGGGATACAGTTGAGGGACTTGAGGAAGCTAGAGAAATTTCACTGACCCAGGTTCCACATTTTAACAAGGCAGTTGTCCTTAGTTGCAAAGAGGCTGTTAGAAAACGTCTCAGGGCCATCAATGAGTCTCGTGCTCAGAAGAGGAAGGCTGGCCAAGTATATGGTGTGCCTCTTTCAGGAGGACAACTTGCTAAGCCTGGCGTTTTTCCTGAACTTAGGCCATGTGGTGAGGACTTCTGGAAGAAATGGATTGAGGGCTTATCTCAACAGCACAAGCGATTGCGCACTTTGGCTGATCATGTTCCTCATGGTTATAAAAAGGCATCGCTTTTAGAGGTTCTTATCAGGAATAATGTTCCACTGCTGAGGGCCACCTGGTTTATAAAGGTTACTTATCTCAATCAGGTTAGACCAGGTTCTGTTGGTACCTCTTCTGGGACTGTTCAGCTGTCTCGTTCTGAGATTTGGACCAAAGATGTTATCAGTTACTTGCAAACTCTTCTGGATGAATTTTTCTCGAAAAATATTTCTCATGCTACTCCTCTTAGTCGAGAGAGATCACCACAAGTGCCTTATACTGGAACTCTGCAACACAAAAGTGATGCATTATTATCTGTTTCTGATGGTGAAGAGCCATCCTTACATTTTAGATGGTGGTATATTGTCCGGCTTCTGCAATGGCATCATGCTGAAGGGCTGATTCTTCCTTCTCTTGTCATTGATTGGGTTTTGAGTCAACTACAGGAAAAAGTACTGCTTGAGGTTTGGCAGCTGTTATTGCCTATTATATATGGCTTTCTAGAAACTGCTGTTCTATCTCAAACCTATGTACGCACTCTTGCTGGAATTGCGCTTCGCACCATCCGTGATCCTGCTCCAGGTGGATCAGATCTAGTAGATAATTCCAGGAGGGCATATACAACCTATGCCCTGATTGAGATGCTCCGGTATTTAATACTTGCGGTGCCAGATACTTTTGTTGCTTTGGATTGCTTTCCATTGCCATCCCCTGTAATCTCACATGCAAAAAATGATGGCAATTTTGTACTAAAACCAACTGAAGCTCCGGGAAAGACGAAAAATAGTTCAGATGATTTTGGCCGCATTATTTTGTGCATTCAGAAACATACAGAAGATCTTGCAAAGGCTGCAAGCCCAGGCCACCCAGGTCTCTGTCCGGCTAAAGTTGCAAAAGCCTTGGATAAATCTCTTATGCTTGGTGATTTACATGTAGCATATAAGCTTATTTTTGAAGATCTTTGTGATGGAACTGTATCTGAAGGTTGGGTTGCAAAAGTTAGCCCTTGCTTAAGGTTATCTCTGAAATGGTTTGGGACTGTAAATACATCACTTATATGTTCAGTGTTCTTCCTTTGTGAGTGGGCAACATGTGATTTCAGGGATGTCCGCACTACCCCTCCTTGTGACATAAAGTTTACAGGTAGGAAAGATCTTTCCCAAGTGCATGTAGCAGTTAGACTTTTAAAGATGAAGATGGGGGATATGAAGAGCATTCACAGAGCCAATCATGTTGCAAAATATTCAAGTCAAGGGAATAATTGGAATCACGTGGGGAACAAATCCAAATTAAAATCTAGTTCAAACCAGAGTACTAATTCTTCAGTCATATTTGAAAGCCCAGGTCCTCTTCATGATATTATAGTTTGTTGGATTGATCAGCATGTGGTGCATAAAGGCGAAGGTCTCAAGCGCTTACATTTATTTTTAGTGGAACTAATTTGTGCAGGCATCTTTTACCCCTTGGCATATGTACGCCAACTGATTGTAAGTGGGATCATGGATATGAGAGGGAATGTGATTGACCGGGAACAATCGAAGAGACACTATCACATCTTAAAGCAGCTACCCGGGCGCTTTATCCATGATGCTTTGGAAGAATCTGGGATTGTTGAAGGGCCGCAACTAGTTGAAGCCTTGCGAGTTTACTTGAATGAACGCCGGCTTATACTTCGTCCTTTGAGTGAGCACCATGATGATGCCAGCAGTGCCAAAATATCTGCTTTGAAGCGAAAACAATATCCAGCTTCTACTGAGCAGGGGAAAACTGTTATTTCTAACACAATATCTTCTAGAAATGTGAAGGATGATGCTAGCACTGATGAACTGAAATCAGCCATCTCAGTACTCTTACAGCTGCCTAATAGTTTATTGAATTTGAGCACTACAGGACGTGATGCATCTGAAGGTGGTGATAGAAGACCTACCTTGTCTCATTACAGCAAGATTGATCCGGTGGAGGGTACACCTGGATGTGAAGAATGTAGACGAGCAAAGAGGCAAAAGTTGAGTGAGGAAAGAAACTCATTTGTTCAAGGTCAGTCTACAGTTTTATGTGATGATGACGATACTTGGTGGGTGAAGAAGGGGATGAAACCCTCAGAGCCTATCAAAGTTGATCAACCACAAAAGTCAACCAAGCAGGTTACCAAGAGTCGACAGAAGAATGTGCGTAAAATGAGTCTTTCTCAACTGGCAGCTTCTAGAATTGAAGGTAGCCAAGGGGCATCATCTAGTCATGTGTGCGATAATAAGGTTAGCTGTCCTCACCATAGAAATCCTATGGATGGTGATGCGCCGAGTTCCGCAGGTAACATCCGAACAAGTCATATTGGGGATGTTGTTTCCATTGGCAAAGCACTGAAGCGCCTTCGCTTTGTTGAGAAAAGGGTTGTGGCAGTTTGGCTAGTGACTGTTGTTCGGCAGATGGTTGAAGAGTCTGAAAAAAGTGTTGGTAAAGTTGGTCAATTTGGCAGGCCTTATTCTACTGTGGATGATAGAAGCTCAATAAGGTGGAAACTTGGTGAGGATGAACTTTCTGCAATACTTTATTTGATGGATATCTCTGATGATTCGGTATCAGCTGTCAAGTTTCTCCTCTGGTTGATGCCAAAGGTTCTCAGTAGTCCCAATTCTACAATTCATAGTGGGAGGAATGTTCTGATGTTGCAAAGGAGTGTGGAAAACCAAGCTTGTCATGTGGGAGAGGCTTTTCTGCTATCGTCACTCAGAAGGTATGAGAATATTCTTGTTGCAGCAGACCTTATTCCTGAAGCTTTGTCGTCTGCAATGCTTCGTGCTTCCACTATTATTGCATCTAATGGAAGAGTTTCGGGTTCAGGAGCTCTATCTTTTACTAGGTATTTATTGAAAAAATACAGTAATGTGGCTAGTGTCATTGAATGGGAGAAAATTTTTAAGGCAACTTGTGATGCAAGACTTTCTTCCGAACTTGAGTCTGGTAGGTCAGTAGATGGAGAGTTGGGGGTGGCCCTTGGAGTTCCTGCAGGGGTTGAGGACCCTGATGATTTTTTCCGCCAAAAGATTAGTGGTGGTCGGTTACCATCCAGAGTAGGTGCAGGCATGAGAGACATTGTACAGCGTAATGTTGAAGATGCGTTCCACTATCTTTTTGGAAAAGATAGAAAGTTCTTTACTGCTGAGACACCAAAAGACCCTGCTTTAGAAAAATGGGATAATGGACATCAAATTGCTCAACAAATTGTTGTGGGTCTAATAGACTGCATAAGGAAGACAGGTGGTGCTGCTCAAGAAGGGGATCCCTCCTTGGTATGTTCTGCTGTTTCTGCAATTGTTGGCAGTATTGGTCCGTCTTTGGCAAAATTGCCTGATTTTTCATCTGGCAATAATCATTCAAATATAATATCAACAACAAGTTCACTGAACTATGCCAGATGCATTCTGCGAATGCATATAACCTGCCTGTGCCTGCTCAAGGAAGCCCTGGGAGAACGCCAAAGCCGTGTATTTGATATTGCTCTTGCAACCGAAGCTTCTACTGCTCTTGCTGGTGTTTTTGCTCCTAGTAAAGCATCCCGAGCTCAGTTTCAAATGTCTCCGGAAGCCCATGATATTAATGCCACTATTTCAAATGACGTGGGAAATAACTCTAATAAAGTTGTGCTTGCAAAAACAACAAAAATTGCTGCTGCTGTTTCAGCACTTGTTGTTGGTGCAGTTATATATGGTGTTACCAGCCTGGAAAGAATGGTAACTGTTCTCAGATTAAAGGAGGGGCTGGACGTAATACAATTTGTAAGAAGCACAAGATCCAATTCAAATGGAAATGCTCGTTCCGTTGGGGCTTTTAAGGTGGACAATTTGATTGAAGTTCATGTCCATTGGTTTAGATTGCTTGTTGGTAACTGCAGAACCCTCTGTGAAGGATTAGTGGTGGATCTTTTGGGTGAACCATCTATTTTAGCACTGTCAAGGATGCAACGTATGCTTCCTCTAAGTTTGGTCTTTCCACCTGCCTATTCCATATTTGCCTTTATTAAATGGCGGCCCTTCATTCTGAATGCTACTGTTGCAGTTCGTGAAGACATGAACCAAATTCATCAGTCTTTAATTGTTGCCATAACTGATGCAATAAAACATTTACCTTTTCGAGATGTATGTTTTAGAGACTGTCAGGGTCTTTATGATCTTATGACTGCAGATGCAACTGATGCTGAATTTGCGACCTTGCTAGAGTTGAATGGCTCTGATATGCAATTAAAATCAACTGCATTTGTTCCTCTCCGATCTAGGCTTTTTCTGAATGCCATGATTGATTGTAAGATGCCACAATCTATTTATACTAAGGATGATGGGAGCCGGATCTCTGGACCTGGTGAATATAAAACTAAGTCTAAAGATGGTGAGTCTAAGCTTCAGGATAAGCTTGTGCATGTTTTGGATACCTTGCAGCCTGCCAAATTCCACTGGCAGTGGGTTGCACTCAGGTTGCTTTTAAATGAACAAGCCCTTGTTGAAAAACTGGAGACACATGACATGTCCATAGCTGATGCTATAAAGTTTTCCTCACCTAGCCCAGAGAAGGCTGCTGCTGCTTCTGAGAATGAGAACAATTTTATTCAAATACTTCTCACAAGGTTACTGGTTAGACCTGATGCCGCACCCCTTTTTTCGGAGTTGATCCATCTCTTTGGCAAGTCACTAGAGGATTCAATGTTGAAGCAAGCTAAGTGGTTCCTTGGAGGCCAAGATGTCCTCTTTGGTCGGAAGACCATTAGACAAAGGCTTCATAACATTGCTGAGAGCAAAGGACTTCCTATTAAGACCCAATTTTGGGAGCCATGGGGTTGGTGCAGTCCATGTACAGAACAAGCTACTATCAAAGGGAGTAAAAAGAAGTTTGATACTACATCTCTTGAAGAAGGAGAAGTTGAAGAGGGAATTCTGAAAAGGTGCCTAAAAGGCTCCTCTAAAGTGATTGACTCTGAAAGCTCAAGCAGTAATCAGCAGCACGTGACTGAGAGAGCTCTTATTGAGTTGCTTCTTCCTTGCATTGATCAAAGCTCTGATGAATCCTGCAATTCTTTTGCAAATGACTTGATGAAACAGTTAAGTTATATTGAGCTACAAATAGCTGCTGTTACAGGTGGAAGTAAGCCTGGGGGAAGTACTCCTCCTGGAATTGAAGGTCAGACAAGTAAAGTAAATAACCGCAAATCACTGAGAGGGGGCAGTCCTGGATTAGCTAGACGAGCAACTGTTGCAATAGATTCTTCTCCACCATGTCCTGCAGCTTTACGTGCTTCTATGTCATTACGTTTGCAGTTACTCCTTAGATTTCTTCCCATTCTTTGCACTGACAGACAGCCATCTGTGCGGAACATGAGACATTTTCTGGCCCCTGTAATTCTTCGTCTCCTTGGTAGTCGGGTTGTGCATGATGATGCAGACATTTTGGCGAAGCGGGAGGTGGATCCATCTTCTGAAGCTGCTTCTGCCTCACTTGTAGATTCTTCTGCCAAGGGTCTATTTGATCGTCTGCTGTTGGTTTTGCATGGATTGTTGAGTAGCTATCCTCCATGCTGGCTTAGGCTGAAACCTGTTTCAAAGTCTACCAATGAACCTACAAGGGAATTTTTTGCATTTGACCGAGAGTTTTTGGAGACTTTACAGAATGACTTAGACCGTATGCATCTGCCAGATTCTATTCGGTGGCGTATCCAAGCTGTGATGCCTATACTCCTTCCCTCTAAGCGGTGCTCTTTCTCCTGCCAGCCGCCGCCAGTTTCACTTTCTTCTCTCACTTGTCTTCAACCCGGCAATACAAATTCTGGGTTTAACTCCACTAGTTCAACTACTCAAAGGAACCCTGTTCTATCAAGGGTTGCACCCAATGCATCAGGGAAGTCTAAACAACCAGACAACGACTTTGAAATTGATCCTTGGACGCTCTTAGAAGATGGTGCAGGATCTTGCCCTTCTACTAGTATTACTGCAAGCATAGGAAGTGGCGACCATGTGAATATTCGAGCTGCCAGCTGGCTGAAAGGGGCTGTGAGGGTTAGACGGACAGACCTTACATATGTTGGTCCTGTGGATGATGATAGTTGA 6660 0.4311 MHRYHAGSCTSAVNNNKIGGPSARDTGRSDSSSLPANFPVSSRRQPPLNPYKLKCDREPLNSRLGAPDFLPQTPNCPEETLTREYLQSGYRDTVEGLEEAREISLTQVPHFNKAVVLSCKEAVRKRLRAINESRAQKRKAGQVYGVPLSGGQLAKPGVFPELRPCGEDFWKKWIEGLSQQHKRLRTLADHVPHGYKKASLLEVLIRNNVPLLRATWFIKVTYLNQVRPGSVGTSSGTVQLSRSEIWTKDVISYLQTLLDEFFSKNISHATPLSRERSPQVPYTGTLQHKSDALLSVSDGEEPSLHFRWWYIVRLLQWHHAEGLILPSLVIDWVLSQLQEKVLLEVWQLLLPIIYGFLETAVLSQTYVRTLAGIALRTIRDPAPGGSDLVDNSRRAYTTYALIEMLRYLILAVPDTFVALDCFPLPSPVISHAKNDGNFVLKPTEAPGKTKNSSDDFGRIILCIQKHTEDLAKAASPGHPGLCPAKVAKALDKSLMLGDLHVAYKLIFEDLCDGTVSEGWVAKVSPCLRLSLKWFGTVNTSLICSVFFLCEWATCDFRDVRTTPPCDIKFTGRKDLSQVHVAVRLLKMKMGDMKSIHRANHVAKYSSQGNNWNHVGNKSKLKSSSNQSTNSSVIFESPGPLHDIIVCWIDQHVVHKGEGLKRLHLFLVELICAGIFYPLAYVRQLIVSGIMDMRGNVIDREQSKRHYHILKQLPGRFIHDALEESGIVEGPQLVEALRVYLNERRLILRPLSEHHDDASSAKISALKRKQYPASTEQGKTVISNTISSRNVKDDASTDELKSAISVLLQLPNSLLNLSTTGRDASEGGDRRPTLSHYSKIDPVEGTPGCEECRRAKRQKLSEERNSFVQGQSTVLCDDDDTWWVKKGMKPSEPIKVDQPQKSTKQVTKSRQKNVRKMSLSQLAASRIEGSQGASSSHVCDNKVSCPHHRNPMDGDAPSSAGNIRTSHIGDVVSIGKALKRLRFVEKRVVAVWLVTVVRQMVEESEKSVGKVGQFGRPYSTVDDRSSIRWKLGEDELSAILYLMDISDDSVSAVKFLLWLMPKVLSSPNSTIHSGRNVLMLQRSVENQACHVGEAFLLSSLRRYENILVAADLIPEALSSAMLRASTIIASNGRVSGSGALSFTRYLLKKYSNVASVIEWEKIFKATCDARLSSELESGRSVDGELGVALGVPAGVEDPDDFFRQKISGGRLPSRVGAGMRDIVQRNVEDAFHYLFGKDRKFFTAETPKDPALEKWDNGHQIAQQIVVGLIDCIRKTGGAAQEGDPSLVCSAVSAIVGSIGPSLAKLPDFSSGNNHSNIISTTSSLNYARCILRMHITCLCLLKEALGERQSRVFDIALATEASTALAGVFAPSKASRAQFQMSPEAHDINATISNDVGNNSNKVVLAKTTKIAAAVSALVVGAVIYGVTSLERMVTVLRLKEGLDVIQFVRSTRSNSNGNARSVGAFKVDNLIEVHVHWFRLLVGNCRTLCEGLVVDLLGEPSILALSRMQRMLPLSLVFPPAYSIFAFIKWRPFILNATVAVREDMNQIHQSLIVAITDAIKHLPFRDVCFRDCQGLYDLMTADATDAEFATLLELNGSDMQLKSTAFVPLRSRLFLNAMIDCKMPQSIYTKDDGSRISGPGEYKTKSKDGESKLQDKLVHVLDTLQPAKFHWQWVALRLLLNEQALVEKLETHDMSIADAIKFSSPSPEKAAAASENENNFIQILLTRLLVRPDAAPLFSELIHLFGKSLEDSMLKQAKWFLGGQDVLFGRKTIRQRLHNIAESKGLPIKTQFWEPWGWCSPCTEQATIKGSKKKFDTTSLEEGEVEEGILKRCLKGSSKVIDSESSSSNQQHVTERALIELLLPCIDQSSDESCNSFANDLMKQLSYIELQIAAVTGGSKPGGSTPPGIEGQTSKVNNRKSLRGGSPGLARRATVAIDSSPPCPAALRASMSLRLQLLLRFLPILCTDRQPSVRNMRHFLAPVILRLLGSRVVHDDADILAKREVDPSSEAASASLVDSSAKGLFDRLLLVLHGLLSSYPPCWLRLKPVSKSTNEPTREFFAFDREFLETLQNDLDRMHLPDSIRWRIQAVMPILLPSKRCSFSCQPPPVSLSSLTCLQPGNTNSGFNSTSSTTQRNPVLSRVAPNASGKSKQPDNDFEIDPWTLLEDGAGSCPSTSITASIGSGDHVNIRAASWLKGAVRVRRTDLTYVGPVDDDS* 2220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1886 2219 MobiDBLite consensus disorder prediction 817 841 - -
Lja3g1886 2219 SMART Med12_2 158 219 IPR019035 GO:0003712|GO:0006357|GO:0016592
Lja3g1886 2219 MobiDBLite consensus disorder prediction 1908 1923 - -
Lja3g1886 2219 MobiDBLite consensus disorder prediction 889 913 - -
Lja3g1886 2219 Pfam Transcription mediator complex subunit Med12 160 219 IPR019035 GO:0003712|GO:0006357|GO:0016592
Lja3g1886 2219 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12 1 2219 - -
Lja3g1886 2219 MobiDBLite consensus disorder prediction 895 913 - -
Lja3g1886 2219 MobiDBLite consensus disorder prediction 1 53 - -
Lja3g1886 2219 MobiDBLite consensus disorder prediction 1900 1929 - -
Lja3g1886 2219 MobiDBLite consensus disorder prediction 8 44 - -
Lja3g1886 2219 PANTHER RNA POLYMERASE II TRANSCRIPTION MEDIATORS PROTEIN 1 2219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1886 Lja-Chr3 21616339 21633919 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1886 - - gmx:100781696 3432.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1886 3 21616339 21633919 Lja3g1886 3 21616339 21633919 ECH