Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1875 ATGTCTTCCCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGTGACTACACGGTGGAGATGATCAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAAAGAGAGTCCTTATGAAGGAGGTGTGTGGAAAGTAAGAGTTGAGCTCCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTGTCAACAAGATTTATCATCCAAATGTTGATGACATGTCAGGATCAGTTTGTCTCGATGTTATCAATCAGACCTGGAGCCCCATGTTTGATCTTGTCAATGTATTTGAGGTGTTTCTCCCACAACTCCTTCTGTATCCAAATCCATCAGACCCCTTGAATGGAGAAGCTGCAGCTTTAATGATGCGTGACCGAGCTACTTATGATCAAAGGGTTAAAGAGTACATTGAGAAGTTTGCTAAGCCAGAACACATAGGAGCTGCTACAGAAGAGAAATCCAGTGATGAGGAGGAGCTAAGTGATGAAGAATATGATTCTAGTGATGAACAGGTGGTTGGTAAGGCTGACCCCTAG 555 0.4324 MSSPSKRREMDLMKLMMSDYTVEMINDGMQEFYVHFHGPKESPYEGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDDMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYDQRVKEYIEKFAKPEHIGAATEEKSSDEEELSDEEYDSSDEQVVGKADP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1875 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Lja3g1875 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 184 - -
Lja3g1875 184 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Lja3g1875 184 SUPERFAMILY UBC-like 4 148 IPR016135 -
Lja3g1875 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA 3 184 - -
Lja3g1875 184 CDD UBCc 7 143 IPR000608 -
Lja3g1875 184 MobiDBLite consensus disorder prediction 151 184 - -
Lja3g1875 184 SMART ubc_7 4 148 - -
Lja3g1875 184 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Lja3g1875 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1875 Lja-Chr3 21444753 21448224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1875 3 115 Miscellaneous Gene Families AT3G17000 23.140 2.47e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1875 K10576 - gmx:548025 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1875 3 21444753 21448224 Lja3g1875 3 21444753 21448224 ECH
Lja1g3075 1 37342479 37345264 Lja3g1875 3 21444753 21448224 PCT