Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1870 ATGGTCTGCAAATTCCATTTCAAAAAACAGCTCCATTTCACTCCAATCCTTTATTCATTTGTTGCTCAATGCTTCTCTAACTCTTCTCATCAACCCCATCCATGGAGCAGACTCAGAGCTTCTGTATCAGTCCCTGATCAAACCCTTTTCAGGGACCCTGACACTGTTCATTTGTTTTGTGCCAATGCCCTTAAAGTCTCTGCCAAAAGGGCTTTTCTTCCGGAAGGAAAACAGTTACATGCCCATTTGATAAAGTTCGGATTTTGTCATGTGCTGTCCTTACAAAATCAAATTTTGAGTGTTTATCTTAAATGCAAGGAAATTGAAGATGCAGATAAACTATTTGATGAATTGCCTGGCAGAAATGTGGTGTCGTGGAACATTATGATTCGCGGTGTTGCCGGACGCGACAATGAAAACGACTCGAGTGCACCACTGTGTGTTTCTTATTTTAAAAGGATGCTGTTGGAAAAGGTGGTTCCAGATTATGTAACTTTTAATGGCCTTATTGGTTCATGTGTTCAGTTTCATAACATTGGTGTGGGTATCCAGCTGCATTGTTATACAGTGAAAGTGGGATTTGATTTGGATTGTTTTGTTGGTTGTGCTCTTGTTGATTTATATGCAAAATGTGGCTTAGTTGAGAATGCAAGGAGGGCTTTTTGTGCTGTTCCATGTAGAGATTTGGTAATGTGTAATGTGATGATTTCTTGCTATGCCTTGAATTGTTTACCTGAAGAGGCTTTTAGCATGTTCAACTTGTTGAGAATGGATGGTGCAAATGGGGATGAGTTCACTTTTAGCAGCCTGCTTAGTGTATGTGATACTTTGGAATATTATGATATTGGGAAGCTGGCTCACAGTCTTATTCTGAGACAGGCATTTGATTCAGATGTTTTAGTGGCTAGTGCATTGATCAACATGTATGCCAAAAACGAAAATATAACCGATGCACGCGGGGTATTTGATGAAATGCTGATTCGAAATGTTGTGGCATGGAACACCATCATTGTTGGGTGTGGGAATTATGGAGATGGGAGTGAAGTTCTGAAGCTTCTCAGAGACATGCTTCGTGAAGGGTTTTCCCCTGATGAATTGACTATTTCCAGCACTATTAGTTTGTGCGGCTATGCTTCTGCCATAACCGAAACACTGCAAACTCATGCCATTGCAGTTAAATTATCCTTTCAAGAATTTCTATCCGTTGCCAATTCTTTGATTAGCGCCTACTCCAAGTGCGGTAACATTACTAGTGCATTGAAATGCTTCAGATTAACAGAAGAACCTGATCTTGTTACATGGACTTCATTAATACATGCATATGCATTCCATGGTCAAGCCGAAAAAGCTACTGAAATGTTTGAGAAGATGCTATCTTGCGGCGTAGTACCTGATCGAGTTTCGTTTCTTGGTGTTCTCTCTGCTTGTGCCCATTGTGGGCTTGTAACAAAGGGACTTCATTACTTTAACTTGATGACCAGTGTGTATCAGATAGTTCCTGATTCAGATCATTACACTTGCCTTGTTGACCTTCTTGGACGATATGGTCTTATAGATGAGGCTTTTGAATTGTTAAGGTCTATGCCTGTGGAAGTTGAATCAGATACGTTAGGAGCATTTATTGGATCTTGCAAACTCCATGCAAATATAGGACTAGCTGAATGGGCTGCAGAGAAGCTCTTCATCATTGAGCCAGAGAAAAGTGTAAACTATGCAGCCATGTCTAACATTTATGCTTCTCAGAGAGATTGGTGTGATGTGGAAAGAGTTAGGAAAATGATTGGAGACAAAGGTGATGCAAAAGTCCCAGGTTGCAGCTGGATTGAGGTTGCTAATCAAGTTCATTCATTTGTATCCCGTGATAAGACCCATCCTAAAGCTTTAGAAATGTATGCTACATTAAAAATGTTACACGTGTGTTTGGATACCAGTTGTTGGCTGTAA 1944 0.4028 MVCKFHFKKQLHFTPILYSFVAQCFSNSSHQPHPWSRLRASVSVPDQTLFRDPDTVHLFCANALKVSAKRAFLPEGKQLHAHLIKFGFCHVLSLQNQILSVYLKCKEIEDADKLFDELPGRNVVSWNIMIRGVAGRDNENDSSAPLCVSYFKRMLLEKVVPDYVTFNGLIGSCVQFHNIGVGIQLHCYTVKVGFDLDCFVGCALVDLYAKCGLVENARRAFCAVPCRDLVMCNVMISCYALNCLPEEAFSMFNLLRMDGANGDEFTFSSLLSVCDTLEYYDIGKLAHSLILRQAFDSDVLVASALINMYAKNENITDARGVFDEMLIRNVVAWNTIIVGCGNYGDGSEVLKLLRDMLREGFSPDELTISSTISLCGYASAITETLQTHAIAVKLSFQEFLSVANSLISAYSKCGNITSALKCFRLTEEPDLVTWTSLIHAYAFHGQAEKATEMFEKMLSCGVVPDRVSFLGVLSACAHCGLVTKGLHYFNLMTSVYQIVPDSDHYTCLVDLLGRYGLIDEAFELLRSMPVEVESDTLGAFIGSCKLHANIGLAEWAAEKLFIIEPEKSVNYAAMSNIYASQRDWCDVERVRKMIGDKGDAKVPGCSWIEVANQVHSFVSRDKTHPKALEMYATLKMLHVCLDTSCWL* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1870 647 TIGRFAM PPR: pentatricopeptide repeat domain 331 365 IPR002885 -
Lja3g1870 647 TIGRFAM PPR: pentatricopeptide repeat domain 432 465 IPR002885 -
Lja3g1870 647 TIGRFAM PPR: pentatricopeptide repeat domain 505 528 IPR002885 -
Lja3g1870 647 TIGRFAM PPR: pentatricopeptide repeat domain 303 331 IPR002885 -
Lja3g1870 647 TIGRFAM PPR: pentatricopeptide repeat domain 230 259 IPR002885 -
Lja3g1870 647 Pfam PPR repeat 404 424 IPR002885 -
Lja3g1870 647 Pfam PPR repeat 230 259 IPR002885 -
Lja3g1870 647 Pfam PPR repeat 96 122 IPR002885 -
Lja3g1870 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Lja3g1870 647 Gene3D Tetratricopeptide repeat domain 281 391 IPR011990 GO:0005515
Lja3g1870 647 Gene3D Tetratricopeptide repeat domain 49 181 IPR011990 GO:0005515
Lja3g1870 647 Gene3D Tetratricopeptide repeat domain 183 280 IPR011990 GO:0005515
Lja3g1870 647 PANTHER OS07G0259400 PROTEIN 42 629 - -
Lja3g1870 647 Pfam PPR repeat 498 528 IPR002885 -
Lja3g1870 647 PANTHER OS07G0578800 PROTEIN-RELATED 42 629 IPR045215 GO:0003723|GO:0009451
Lja3g1870 647 Pfam E motif 547 609 IPR046848 -
Lja3g1870 647 Gene3D Tetratricopeptide repeat domain 400 639 IPR011990 GO:0005515
Lja3g1870 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Lja3g1870 647 Pfam PPR repeat family 429 477 IPR002885 -
Lja3g1870 647 Pfam PPR repeat family 328 375 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1870 Lja-Chr3 21354290 21356233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1870 109 637 Glycoside Hydrolase AT3G49170 32.584 8.12e-99 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1870 - - gmx:100778378 1021.92