Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1786 ATGAAATTTTGCATCTTCTCTCAGAACCAAAGCTTTATGGATAAGCTAGCTCCCTTTCATAATCTTAATCCTTATACTGCTCACATGCTACCAAAATGCCATTCACCAACTTCAGTTTCTCTTGGATTGTCAGATACTCAGTTCTTTTCTTCAGCTCAATTTTCCACACCAAGATTTTCTCCTTCCTTTCAGTCTTTGGATGAGTTGGGTGGGATAAGGACTTTGAATTCTGTCAGGGAATTGCATGCAAAGATGTTGAAGATCCCAAATAAGAGGAGCATGACAACAATGGATGGAAGCTTGATAAGATACTATTTGGAGTTTGGAGATTTCATGTCAGCAATAAAGGTGTTCTTTGTGGGTTTTGCTAAGAATTATCATCTCTGCAATTCTTTTCTGGATGAATTTGGAAGTTCTGGAGGTGACCCACATCAGATTCTGGAGGTCTTCAAGGAACTGCATAGTAAAGGTGTGGAATTTGATAGCAGAGCTCTCACTGTTGTTCTGAAAATTTGCATGAGTTTGATGGATTTGTGGGCTGGGTTGGAAATTCATGCTTGTTTGGTCAAGAGAGGGTTCCATGTTGATGTACATTTGAGTTGTGCATTGATCAATTTCTATGAGAAGTGCTGGGGTATAGACAAGGCAAATCAAGTGTTTGATGAAACTTCTCACCAAGAAGATTTCTTGTGGAATACAGTAATTATAGCAAACTTGAGGAGTGAAAGATATGGGAAGGCCTTAGAGCTATTCCGTAGCATGCAGTCAGCTTCTGCCAAAGCCACTGGTGGTACCATTGTCAAGCTGCTGCAGGCATGTGGAAAACTGAGAGCTCTCAATGAAGGAAAGCAGATTCATGGGTACGTTTTAAGATCTGGACTAGTGTCAAATACGTCGATTTGCAATACTATAATTAGCATGTACTCTAGAAACAATAGACTCAAACTAGCTAAAGCAGTTTTTGATTCAATGGAGGATCCTAACTTATCATCTTGGAACTCAATAATTTCGAGTTATGCGATTGGTGGCTGCTTGAATGATGCATGGGACACTTTAAAAGAAATGGAGCATTCCAGCATTAAACCAGACATTGTAACATGGAATTCTCTTTTGTCTGGCCATCTTCTTCAGGGGTCATATGAAATGGTTCTCTCCAGTTTACGGAGCCTGCGAAGTGCAGGCTACAAGCCAGATTCATGTTCTATAACTAGTGCCCTACAAGCAGTTATTGAATTGGGTTGCTTTAAATTAGGTAAAGAAATCCATGGTTACACAATTAGAAGTATGCTTAACAGTGATGTCTATGTCAGTACCTCATTGGTGGATATGTATGTTAAGAATGATTGTTTAGGTAAAGCTCATGCAGTGTTCCTTCATGCAAAGAACAAAAACATTTTTGCCTGGAACTCATTGATATCTGGTTACTCCTACAAGGGCCTGTTCAGTGATGCTGAAAAACTATTGAACCAGATGGAGGAGGAAGGGATGAAACCTGATCTGGTGACATGGAATGGTTTGGTTTCAGGTTATTCATTGTGGGGCTGTAATGAGGAAGCTTTTGCTGTGATCAATCGAATCAAGAGTTCAGGACTTCGTCCTAATGTCGTGTCGTGGACCGCTATGATCTCAGGATGTTCTCAAAATGAGAAGTATATGGATGCCCTACAGCTTTTCAGCCAAATGCAAGCAGAAAATGTAAAACCTAACTCTACTACCGTTTGCAGCTTGCTTCGCGCTTGTGCAGGCCCATCTTTGTTAGAGAAAGGCGAAGAGGTACACTGCTTCTGTATAAGACTTGGGTATGTGGATGATGTATATATAGCCACAGCCCTAATTGACATGTATAGTAAGGGAGGAAAACTAAAAGTAGCCTATGAGGTTTTCAGGAAAATTAAAGAGAAAACACTACCATGTTGGAATTGCATGATGATGGGGTATGCCATTTATGGCCATGGCAAAGAGGTAATTACTCTTTTTGACAAGATGTGTAAAACAGGTATTAGACCTGATGCTATAACCTTCACCGCTCTTCTATCTGGCTGCAAGAATTCATGTTTGGTTGATGAAGGGTGGAAGTACTTTGACAGCATGCAGACAGATTACAACATTGTTCCGAGAATCGAGCACTACACTTGCATGGTAGACCTTCTTGGGAAAGCTGGTTTTCTTGATGAAGCTTTAGATTTCATCCACACCATGCCATTTAAGCCAGATGCCAGTATTTGGGGTGCTCTTCTTGCATCCTGTAGAATTCACAAAAACATTCAGCTAGCAGAGATTGCAGCTAGGAATCTTTTCAAATTGGAACCTTATAATTCTGCTAACTACGTGCTGATGATGAATATATATTCCGACTTAAATAGATGGGACGATGTGGAGCGTCTTAAAGATTCAATGGCTGTCCAGGAGATTAAATGCCCCAATGTCTGGAGCTGGACACAAATTAACCAGACCATTCATGTGTTCTCCACAGATAGGACATCACATCCAGAGGAAGGGAAAATATATTTTGAGTTATATCAATTAATTTCGGAAATGCGAAAGCTGGGATATGTACCTGATGTTAATTGTGTATATCAGAATATTGACGACAATGAGAAGGAGAAGGTTCTGCTCAGTCACACTGAGAAGCTGGCTATGACTTATGGACTGATGAAAACAAAAGGTGAATCACCAATTAGGGTAGTTAAGAACACGAGAATTTGTCATGACTGTCATACAGTAGCAAAGTATGTTTCCTTGGCTCGAAATCGCGAGATTTTCCTCAGAGATGGTGGCCGTTTTCACCATTTTAGAAATGGGAAATGCTCCTGCAATGATCGGTGGTAG 2829 0.404 MKFCIFSQNQSFMDKLAPFHNLNPYTAHMLPKCHSPTSVSLGLSDTQFFSSAQFSTPRFSPSFQSLDELGGIRTLNSVRELHAKMLKIPNKRSMTTMDGSLIRYYLEFGDFMSAIKVFFVGFAKNYHLCNSFLDEFGSSGGDPHQILEVFKELHSKGVEFDSRALTVVLKICMSLMDLWAGLEIHACLVKRGFHVDVHLSCALINFYEKCWGIDKANQVFDETSHQEDFLWNTVIIANLRSERYGKALELFRSMQSASAKATGGTIVKLLQACGKLRALNEGKQIHGYVLRSGLVSNTSICNTIISMYSRNNRLKLAKAVFDSMEDPNLSSWNSIISSYAIGGCLNDAWDTLKEMEHSSIKPDIVTWNSLLSGHLLQGSYEMVLSSLRSLRSAGYKPDSCSITSALQAVIELGCFKLGKEIHGYTIRSMLNSDVYVSTSLVDMYVKNDCLGKAHAVFLHAKNKNIFAWNSLISGYSYKGLFSDAEKLLNQMEEEGMKPDLVTWNGLVSGYSLWGCNEEAFAVINRIKSSGLRPNVVSWTAMISGCSQNEKYMDALQLFSQMQAENVKPNSTTVCSLLRACAGPSLLEKGEEVHCFCIRLGYVDDVYIATALIDMYSKGGKLKVAYEVFRKIKEKTLPCWNCMMMGYAIYGHGKEVITLFDKMCKTGIRPDAITFTALLSGCKNSCLVDEGWKYFDSMQTDYNIVPRIEHYTCMVDLLGKAGFLDEALDFIHTMPFKPDASIWGALLASCRIHKNIQLAEIAARNLFKLEPYNSANYVLMMNIYSDLNRWDDVERLKDSMAVQEIKCPNVWSWTQINQTIHVFSTDRTSHPEEGKIYFELYQLISEMRKLGYVPDVNCVYQNIDDNEKEKVLLSHTEKLAMTYGLMKTKGESPIRVVKNTRICHDCHTVAKYVSLARNREIFLRDGGRFHHFRNGKCSCNDRW* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1786 942 Pfam PPR repeat family 638 681 IPR002885 -
Lja3g1786 942 Pfam PPR repeat family 463 510 IPR002885 -
Lja3g1786 942 Pfam PPR repeat family 533 581 IPR002885 -
Lja3g1786 942 Pfam PPR repeat family 327 373 IPR002885 -
Lja3g1786 942 Pfam DYW family of nucleic acid deaminases 850 942 IPR032867 GO:0008270
Lja3g1786 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Lja3g1786 942 PANTHER OS05G0586900 PROTEIN 224 930 - -
Lja3g1786 942 Gene3D Tetratricopeptide repeat domain 62 174 IPR011990 GO:0005515
Lja3g1786 942 Gene3D Tetratricopeptide repeat domain 425 553 IPR011990 GO:0005515
Lja3g1786 942 Gene3D Tetratricopeptide repeat domain 175 294 IPR011990 GO:0005515
Lja3g1786 942 TIGRFAM PPR: pentatricopeptide repeat domain 536 569 IPR002885 -
Lja3g1786 942 TIGRFAM PPR: pentatricopeptide repeat domain 638 671 IPR002885 -
Lja3g1786 942 TIGRFAM PPR: pentatricopeptide repeat domain 467 499 IPR002885 -
Lja3g1786 942 TIGRFAM PPR: pentatricopeptide repeat domain 672 705 IPR002885 -
Lja3g1786 942 TIGRFAM PPR: pentatricopeptide repeat domain 501 535 IPR002885 -
Lja3g1786 942 TIGRFAM PPR: pentatricopeptide repeat domain 300 325 IPR002885 -
Lja3g1786 942 TIGRFAM PPR: pentatricopeptide repeat domain 331 364 IPR002885 -
Lja3g1786 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Lja3g1786 942 Gene3D Tetratricopeptide repeat domain 584 685 IPR011990 GO:0005515
Lja3g1786 942 Gene3D Tetratricopeptide repeat domain 297 421 IPR011990 GO:0005515
Lja3g1786 942 Gene3D Tetratricopeptide repeat domain 686 767 IPR011990 GO:0005515
Lja3g1786 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Lja3g1786 942 Pfam PPR repeat 300 325 IPR002885 -
Lja3g1786 942 Pfam PPR repeat 230 256 IPR002885 -
Lja3g1786 942 Pfam PPR repeat 609 634 IPR002885 -
Lja3g1786 942 Pfam PPR repeat 709 733 IPR002885 -
Lja3g1786 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Lja3g1786 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 634 IPR002885 -
Lja3g1786 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Lja3g1786 942 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Lja3g1786 942 PANTHER OS05G0586900 PROTEIN 141 224 - -
Lja3g1786 942 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 141 224 - -
Lja3g1786 942 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 224 930 - -
Lja3g1786 942 Pfam E motif 752 805 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1786 Lja-Chr3 20154202 20157408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1786 139 942 Glycoside Hydrolase AT3G49170 30.000 6.21e-129 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1786 - - gmx:100796795 1528.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1786 3 20154202 20157408 Lja3g1786 3 20154202 20157408 ECH