Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1752 ATGGGTATTGATTCAAATCTTCAATACGTGATAGAGTTGTTGTCACCCCTGAAAACCCCACCTCAAATGCAGTCTTTTAGCGCTTTCCTCCGAGCACCGCCGCAGAATGAATCCTCCGATCACCTTAACCGGAACCCTCCACCGGCGGTGAAGCGAACGGTGAAGAAAACACTGATCATCGACGAGTCTTCACTGGAAAACTCTGATCTGGGTCCGTTTCTTCTGAAGATGGCCCGAGACACCATAGCTTCGGGTAATGATGACCCGGAAAAGGCATTGGACTACGCTATTCGGGCCTCCATGAATTTCGAGCGGTGTTCGGGTCCGGGTCTGGAGCTTGCCACGTGTCTGCATGTTGTGGCGGCGATTTACAGCGGGTTGGGACGGTTGGGTGAGGCGGTTGAGGCTTTGGAGCGGTCCATTTTTCTGTTGGATACTGAAAACGGGTCGGATCATGCTATGGCGAAGTTTTCTGGGTATATGCAGCTTGGTGATACGTATTCAATGACTGGATATTTGGATAGATCCATTTCGTGTTATGAGTCGGGTTTGAAGATCCAAATTGAGACTCTGGGTAAGTCCGACCCGAGAGTTGCAGAGACTTGCAGGTACTTAGCTGAAGCACATGTTCAAGCCATGCAATTTGATGAGGCAGAGCACTTCTGCAAGAAAACCCTCGAAATTCACCGGGAGCATTGCTCAGCTGCCTCCCTTACAGAAGCTGCTGACCGGCGTCTCATGGCTCTTATATGTGAGGCAAAGGGAGATTACGAAACTGCACTTGAGCACCTCATCCTAGCTAGCATGTCAATGATCGCTAACGGGCAAGACACTGAGGTTGCAGCTATTGACATCAGCATTGGAGATATTTACTTGTCCCTCTGTCGTTTCGATGAGGCTGTTTTCGCTTATCAGAAAGCACTAACAGTGTTCAAGTCCACCAAGGGCGAGAATTACAATTCAGTGGCGCTAGTCTACATTCGCCTCGCCGACCTTTACTACAAGACAGGAAAACTACGCGAGTCGAAATCCTATTGTGAAAATGCGTTAAGAATATACAGCAAACCCGTGCCTGGAACAACAGCTGGAGAGATTGCAAGTGGGTTGACTGAAATCTCAGCTATCTATGAAGCTCTAAACGAGCCTGAGGAGGCGCTTAAGCTATTGCAGAAGGCGGTGAAGTTATTGGAGGATATCCCCGGACAATATAGGACGGTGGCGGGTATAGAAGCTCAAATGGGAGTGATGTTCTACATGGTTGGGAATTATATGGATTCTTGGAAATCTTTTGATAATGCTATCTCCAAGCTGAGAGCCAGTGGAGAGAGGAAATCTGCGTTTTTCGGAGTTGTACTGAACCAGATGGGGTTGGCATGCGTGCAACTGTATAAAATAGGAGAGGCTGCTACACATTTTGAGGAAGCAAGAGAGATATTGGAGCAGGAGTATGGAACATATCATTTGGAAACACTTGGTGTGTATAGCAATCTTGCAGCTACTTATGATGCCATGGGGAGAGTTGAAGATGCCATTGTGATATTGGAATACATACTCAAGATGAGAGAAGAAAAGCTTGGAACTGCAAATCCTGATGTTGATGATGAAAAGAAAAGACTGTTTGAGCTTTTGAAAGAATCAGGAAGAGTTCGGAATAGAAAGGGAAAATCACTAGAAATCCTCATAGATTCCAACACCTTAAAGATGAAGAAGGAAGCAAAAAGGAGATGGGCTTCATTTGGTTTGAAAACTTAG 1752 0.4635 MGIDSNLQYVIELLSPLKTPPQMQSFSAFLRAPPQNESSDHLNRNPPPAVKRTVKKTLIIDESSLENSDLGPFLLKMARDTIASGNDDPEKALDYAIRASMNFERCSGPGLELATCLHVVAAIYSGLGRLGEAVEALERSIFLLDTENGSDHAMAKFSGYMQLGDTYSMTGYLDRSISCYESGLKIQIETLGKSDPRVAETCRYLAEAHVQAMQFDEAEHFCKKTLEIHREHCSAASLTEAADRRLMALICEAKGDYETALEHLILASMSMIANGQDTEVAAIDISIGDIYLSLCRFDEAVFAYQKALTVFKSTKGENYNSVALVYIRLADLYYKTGKLRESKSYCENALRIYSKPVPGTTAGEIASGLTEISAIYEALNEPEEALKLLQKAVKLLEDIPGQYRTVAGIEAQMGVMFYMVGNYMDSWKSFDNAISKLRASGERKSAFFGVVLNQMGLACVQLYKIGEAATHFEEAREILEQEYGTYHLETLGVYSNLAATYDAMGRVEDAIVILEYILKMREEKLGTANPDVDDEKKRLFELLKESGRVRNRKGKSLEILIDSNTLKMKKEAKRRWASFGLKT* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1752 583 Pfam Tetratricopeptide repeat 280 354 - -
Lja3g1752 583 Pfam Tetratricopeptide repeat 451 522 - -
Lja3g1752 583 Gene3D Tetratricopeptide repeat domain 81 269 IPR011990 GO:0005515
Lja3g1752 583 SUPERFAMILY TPR-like 116 527 IPR011990 GO:0005515
Lja3g1752 583 SMART tpr_5 323 356 IPR019734 GO:0005515
Lja3g1752 583 SMART tpr_5 449 482 IPR019734 GO:0005515
Lja3g1752 583 SMART tpr_5 491 524 IPR019734 GO:0005515
Lja3g1752 583 SMART tpr_5 199 232 IPR019734 GO:0005515
Lja3g1752 583 SMART tpr_5 281 314 IPR019734 GO:0005515
Lja3g1752 583 SMART tpr_5 157 190 IPR019734 GO:0005515
Lja3g1752 583 SMART tpr_5 366 399 IPR019734 GO:0005515
Lja3g1752 583 SMART tpr_5 114 147 IPR019734 GO:0005515
Lja3g1752 583 Gene3D Tetratricopeptide repeat domain 450 574 IPR011990 GO:0005515
Lja3g1752 583 Gene3D Tetratricopeptide repeat domain 270 448 IPR011990 GO:0005515
Lja3g1752 583 PANTHER KINESIN LIGHT CHAIN-LIKE PROTEIN 34 582 - -
Lja3g1752 583 Pfam MalT-like TPR region 117 264 IPR041617 -
Lja3g1752 583 ProSiteProfiles TPR repeat profile. 281 314 IPR019734 GO:0005515
Lja3g1752 583 ProSiteProfiles TPR repeat profile. 366 399 IPR019734 GO:0005515
Lja3g1752 583 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 34 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1752 Lja-Chr3 19591363 19595104 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1752 - - lja:Lj3g3v2476580.1 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1752 3 19591363 19595104 Lja3g1752 3 19591363 19595104 ECH