Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1743 ATGGCCAACTTAGTCATCTTGTTTATGCTGTGGCTGAGTATGACATGCACTATCTGCAATGTGAAACTTATGGCATATGGAAGTACAAGAAGAGTATCAACCAGATTCTATGATTTCAAGGTTCAAACCAAAAGAGTTACTAAACTTTGCAACTCCAATGACATTGTTACAGTTAATGGTATGCTTCCAGGGCCAGCAATTTACGCCCAAGAAGATGATAGAATCATAGTTAAAGTCACCAATAAGACACCTTTCAATGTTACAATTCACTGGCATGGTGTCAGGCAAAGGCTATCATGCTGGTATGATGGACCATCTTATATAACACAGTGTCCCATTCAAGCAGGCCAGAGTTTCACCTATAACTTTTCAATGGTGAAGCAGAAAGGCACATTCTTCTGGCATGCTCATGTTTCTTGGCTAAGAGGGACGGTTTATGGTGCCATGATTGTTTACCCAAAGACCAGGGTACCTTATCCATTTAAGAGTCCTTATCAAGAAAATATAATCATACTAGGGGAGTATTGGTTGCAGGATCTGCAACAAATTGAGCATGCCACTCTAGCAAGTGGAGGAGCTCCTCCTAAAGCAGATGCATATACCATCAACGGTCATCCAGGCCCCAACTACAACTGCTCAATTAATGATATTTACCAAATTGATGTGATCCCGGGGAAGACATATTTGTTAAGACTGATTAACGCAGGTTTAAACACTGAGAACTTCTTTTCCATTGCTAAACACAAGTTAACAATCATTGAAGCTGATGCTGAATACACAAAGCCATTCACTACAGACACAGTGATGCTTGGACCTGGCCAAACACTGAATGTTCTTGTTTCTGCTAATCAATCAGTAGGAAAATACTCCATGGCTGTGGCACCATACAAGTCTGGAAAGATTGTCAATTATCAAAACATTTCAGCCATTGCCAGCTTCAACTATATGGGGGCTGCACCGGATAGCTTATATGTAGCAGCTAAATTACCTAAACTAGATGATAAACTGGCTGTAAAGACAGTCATGGATGGATTAAGGAGCCTGAATCAAGTCAATGTTTTTAAGGAAATTGATAAAAACCTATTCATCACAATTGGATTGAATGTTCAAAAGTGCCACTCAAAGACACCAAAGCAAAACTGCCAAGCTATGAATGGGGTGCTGGCAGCTTCAATGAACAATATAAGTTTCATTCATCCCAATATTTCAATCCTGGAAGCTTATTATAAGAAGATTAAAGGATCATATACTGAAGATTTTCCTGACGCCCCCCCAAAGTTCTATGACTTTGTTAATGGTGCCCCAAATAAGATTCCATATGACACACAAGCATTGAATGGGACTAGAACAAAGGTCCTTGAATATGGAAGCAGGGTGCAACTCATTCTGCAGAACACAGGGACAGTCAACACTGAAAACCACCCAATTCACATCCATGGCTACAGCTTTTATGTCATAGGGTACGGCACAGGCAATTACAACCCACAAACTGCACAATTCAACTTAGTGGATCCTCCATACATGAATACAATTGGAGTTCCAGTGGGTGGATGGGCAGCAATTCGCTTTGTCGCTGATAATCCAGGGGTGTGGTATATGCATTGCCACATTGAGATACACCAGTCGTGGGGACTAGGAATGGTATTTATAGTGAACAATGGAAAAGGAGCGAATGAATCATTACCACCGCCTCCATCAGACCTACCACAATGTTAA 1716 0.4091 MANLVILFMLWLSMTCTICNVKLMAYGSTRRVSTRFYDFKVQTKRVTKLCNSNDIVTVNGMLPGPAIYAQEDDRIIVKVTNKTPFNVTIHWHGVRQRLSCWYDGPSYITQCPIQAGQSFTYNFSMVKQKGTFFWHAHVSWLRGTVYGAMIVYPKTRVPYPFKSPYQENIIILGEYWLQDLQQIEHATLASGGAPPKADAYTINGHPGPNYNCSINDIYQIDVIPGKTYLLRLINAGLNTENFFSIAKHKLTIIEADAEYTKPFTTDTVMLGPGQTLNVLVSANQSVGKYSMAVAPYKSGKIVNYQNISAIASFNYMGAAPDSLYVAAKLPKLDDKLAVKTVMDGLRSLNQVNVFKEIDKNLFITIGLNVQKCHSKTPKQNCQAMNGVLAASMNNISFIHPNISILEAYYKKIKGSYTEDFPDAPPKFYDFVNGAPNKIPYDTQALNGTRTKVLEYGSRVQLILQNTGTVNTENHPIHIHGYSFYVIGYGTGNYNPQTAQFNLVDPPYMNTIGVPVGGWAAIRFVADNPGVWYMHCHIEIHQSWGLGMVFIVNNGKGANESLPPPPSDLPQC* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1743 571 ProSitePatterns Multicopper oxidases signature 2. 534 545 IPR002355 GO:0005507
Lja3g1743 571 SUPERFAMILY Cupredoxins 163 298 IPR008972 -
Lja3g1743 571 CDD CuRO_3_LCC_plant 416 554 IPR034289 GO:0005507
Lja3g1743 571 Pfam Multicopper oxidase 423 554 IPR011706 GO:0005507|GO:0016491
Lja3g1743 571 PANTHER LACCASE-6 19 571 - -
Lja3g1743 571 SUPERFAMILY Cupredoxins 34 176 IPR008972 -
Lja3g1743 571 ProSitePatterns Multicopper oxidases signature 1. 529 549 IPR033138 -
Lja3g1743 571 PANTHER MULTI-COPPER OXIDASE 19 571 IPR045087 -
Lja3g1743 571 Gene3D - 20 153 IPR008972 -
Lja3g1743 571 SUPERFAMILY Cupredoxins 355 571 IPR008972 -
Lja3g1743 571 CDD CuRO_2_LCC_plant 170 315 IPR034285 -
Lja3g1743 571 CDD CuRO_1_LCC_plant 37 153 IPR034288 GO:0005507
Lja3g1743 571 Gene3D - 370 571 IPR008972 -
Lja3g1743 571 TIGRFAM laccase: laccase 34 571 IPR017761 GO:0046274|GO:0048046|GO:0052716
Lja3g1743 571 Pfam Multicopper oxidase 167 317 IPR001117 -
Lja3g1743 571 Pfam Multicopper oxidase 41 155 IPR011707 GO:0005507
Lja3g1743 571 Gene3D - 165 350 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1743 Lja-Chr3 19471391 19474210 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1743 K05909 - gmx:100789406 1027.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1743 3 19471391 19474210 Lja3g1743 3 19471391 19474210 ECH