Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1735 ATGGAAAGCAACAAGGACATGAAGAAAACCACCATGGAAGCAGAAGAGTTTGAGGACTTGCTACCAGTGATGGCAGAGAAGCTTGATGTGGAAACCTTCGTGTCTGAACTATGTGGGGGCTTCAAGCTTCTATCAGATCCTGAAACAGGTTTGATCTCAAGCGAGAGTCTGATGAGAAATTCAGCTCTACTTGGCATGGATGGGATGACCAAGGAGGATGCAGAGGAGATGGTTAAACAGGGTGATCTTGATGGAGATGGAAGCCTGAATGAGACTGAATTTTGCATCCTCATGGTGAGGCTTAGCCCTGGAATGATGGAGGATGCTGAGTCGTGGTTGGAGAAGGCACTTGAAGAAGAGTTCAGAAAATCATCAACTTAG 381 0.4619 MESNKDMKKTTMEAEEFEDLLPVMAEKLDVETFVSELCGGFKLLSDPETGLISSESLMRNSALLGMDGMTKEDAEEMVKQGDLDGDGSLNETEFCILMVRLSPGMMEDAESWLEKALEEEFRKSST* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1735 126 Pfam EF-hand domain pair 48 100 IPR002048 GO:0005509
Lja3g1735 126 SUPERFAMILY EF-hand 22 122 IPR011992 -
Lja3g1735 126 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Lja3g1735 126 PANTHER CALCIUM-BINDING PROTEIN KIC 3 123 IPR044205 GO:0005509
Lja3g1735 126 PANTHER CALCIUM-BINDING PROTEIN KIC 3 123 - -
Lja3g1735 126 Gene3D - 14 126 - -
Lja3g1735 126 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1735 Lja-Chr3 19401127 19401916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1735 10 121 EF-hand Containing Proteins AT2G46600 69.643 2.24e-54 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1735 K24345 - gmx:100787197 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1735 3 19401127 19401916 Lja3g1735 3 19401127 19401916 ECH