Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1732 ATGAACCAAGTGAAGCAAATCCATGGTTACACACTAAGAACTGGCATAGACCAAACCAAAACCCTCATTGAGAAGCTACTTGAAATCCCAAACCTGCATTATGCCCAAGCTGTGTTGCACCACTCACCCAACTCCACTGTCTTCCTCTACAACAAGCTCCTTCAAGCCTACTCCTCCCATTCCCAACACCAACACCAATGCTTCTCCCTTTACTCCCAAATGCGCCTTCTTGGTCACTCACCAAACCAATACACTTTCAACTTTCTCTTCTCTACCTGCACTTCCCTTTCCTCCCTTTCCCTCGGCCAAATGCTCCATGCCCACTTCATCAAATCAGGCTTTGCACCTGATGTCTTTGCCGCCACCGCGTTGCTCGACATGTATGCGAAAGTGGGTACGTTGGAGCTCGCACGCCGGCTGTTTGATGAAATGCCTGTGAGAGAGGTACCCACCTGGAACGCTATGATGGCGGGGCATGCGAGGTTTGGTGATGTGGATGGAGCGTTGGAGTTGTTCAGGTTGATGCCTTCTAGGAATGTGGTGTCATGGACCACCATGATATCTGGTTACTCGAAGAACAAGCAGTATGAGAAGGCTTTGGGGTTGTTCCTGAGGATGGAGTGTGAGGAAGATATTATGCCCAATGCAGTAACTTTGGCAAGCATTTTGCCAGCTTGTGCAAATCTTGGGGCACTGGAAATTGGGCAGAGGGTTGAAGCTTATGCGAGGAAAAATGGGTTCTTTAAGAATTTGTATGTGAGCAATGCTGTGTTGGAGATGTATGCAAAATGTGGTCATATTGATGTTGCTTGGCGGGTATTTAATGAGATTGGTAGCTTGAGAAACCTATGCTCTTGGAATTCAATGATCATGGGTTTGGCTGTCCATGGAAAATGCGGCAAGGCCCTTGAGCTTTATGATCAAATGCTGAGAGAAGGAACTACACCTGATGATGTAACATTCGTGGGGCTTCTCTTAGCATGCACCCATGGAGGCATGGTTGAAAAAGGCAGGCATATCTTCAAGTCAATGAAAACAGACTTCAACATCATTCCCAAACTAGAACACTATGGCTGCATGGTTGATCTACTAGGCCGCGCTGGGAAGTTGAGAGAAGCTTATGAGGTCATACAAACTATGCCAATGAAACCAGACTCAGTAATATGGGGGACTCTATTAGGAGCTTGCAGCTTTCATGGTAATGTTGAGCTGGCTGAGATAGCAGCTGAGTCACTATTTACACTTGAGCCTCGGAACCCGGGAAACTATGTCATTCTTTCCAACATTTATGCATCAGCGGATCAATGGGACGGAGTTGCAAAGCTCAGAAAGGTGATGAAGGGAAGCCAAATTACAAAATCAGCTGGACATAGTTTCCTTGAAGAGGGAGGTCAGCTGCATAAGTTCATTGTGGAGGATAGATCACATCCAAAAAGCAATGAAATTTTTGCTTTGCTTGATGGAGTTTATGAAATGTTTAAGTTCAATAGAAGTGCATTTGAGTGCCATTTGGATCTTGATTTGTGCAACTAA 1533 0.456 MNQVKQIHGYTLRTGIDQTKTLIEKLLEIPNLHYAQAVLHHSPNSTVFLYNKLLQAYSSHSQHQHQCFSLYSQMRLLGHSPNQYTFNFLFSTCTSLSSLSLGQMLHAHFIKSGFAPDVFAATALLDMYAKVGTLELARRLFDEMPVREVPTWNAMMAGHARFGDVDGALELFRLMPSRNVVSWTTMISGYSKNKQYEKALGLFLRMECEEDIMPNAVTLASILPACANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGHIDVAWRVFNEIGSLRNLCSWNSMIMGLAVHGKCGKALELYDQMLREGTTPDDVTFVGLLLACTHGGMVEKGRHIFKSMKTDFNIIPKLEHYGCMVDLLGRAGKLREAYEVIQTMPMKPDSVIWGTLLGACSFHGNVELAEIAAESLFTLEPRNPGNYVILSNIYASADQWDGVAKLRKVMKGSQITKSAGHSFLEEGGQLHKFIVEDRSHPKSNEIFALLDGVYEMFKFNRSAFECHLDLDLCN* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1732 510 Gene3D Tetratricopeptide repeat domain 16 147 IPR011990 GO:0005515
Lja3g1732 510 Gene3D Tetratricopeptide repeat domain 148 279 IPR011990 GO:0005515
Lja3g1732 510 Gene3D Tetratricopeptide repeat domain 280 481 IPR011990 GO:0005515
Lja3g1732 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Lja3g1732 510 Pfam PPR repeat 255 277 IPR002885 -
Lja3g1732 510 Pfam PPR repeat 356 381 IPR002885 -
Lja3g1732 510 Pfam PPR repeat 122 146 IPR002885 -
Lja3g1732 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Lja3g1732 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 147 IPR002885 -
Lja3g1732 510 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 461 - -
Lja3g1732 510 Pfam E motif 399 460 IPR046848 -
Lja3g1732 510 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Lja3g1732 510 TIGRFAM PPR: pentatricopeptide repeat domain 151 181 IPR002885 -
Lja3g1732 510 TIGRFAM PPR: pentatricopeptide repeat domain 181 215 IPR002885 -
Lja3g1732 510 Pfam PPR repeat family 46 93 IPR002885 -
Lja3g1732 510 Pfam PPR repeat family 178 227 IPR002885 -
Lja3g1732 510 Pfam PPR repeat family 282 328 IPR002885 -
Lja3g1732 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 46 81 IPR002885 -
Lja3g1732 510 PANTHER OS06G0125600 PROTEIN 2 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1732 Lja-Chr3 19376007 19377651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1732 5 487 Glycoside Hydrolase AT3G49170 34.765 5.94e-98 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1732 - - gmx:100790321 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1732 3 19376007 19377651 Lja3g1732 3 19376007 19377651 ECH