Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1697 ATGGAGCTCGACCTCCGCTCCTTCATCCCTTCCCTCGCCGCCGACACCGACGACGCCGACGACGGCCCTCACCGGACAATCGACGAAATCCTCAACGAATGCGACACATCCTCTTCCTCATCATCACCCTCTCCTCCCTCTTCTCCCTCACAAACTTCAAACACCAATTCCCAACCCGAACCCGTTCCCTTCTCCCGGGTCAAACCCGCCCAATTCCCCAACCCTACCAGAGCTCCGCGCCCATTCTCCTCCCTTTTGGACCGAATCAGACCCAACACTAAGCCCGGCGCGGCCCTCGCCGCCGCTGCTGCCGCCTCCCGAGCCGTCCCCACTCCCCATGCCGCCGCGATCATCTCCCGGAGGAAAGTTGTCGCCGATTTGGGGTCCTCGATCGCCGGCGATGATGATGGTGGTTCTGATGTTTCTTCAAAGGGGGAATTGGGCGAGAAAATCGATAGGAAAGTTGAGAACATTGATAACAAGATTGAGGGAAGTGAGAGTGAGGGTTTTTCTTCTGCTGATGCAGAAATTGCAACTGAAGTGGAAGAGTTGAAGGATGGTAGTGCTGACATTCAGGTGCACACTGATTCTTCTCTTGTGAGTGAGGAGAAGAGTGATTTGGATGAATTTCCTGAGAATGATATAGATTCTGCACCTTTTGATGATGTTGGTGGTAGTGGTGAAAAGGGTATTGTTGATTTTGTTGATGTTGGTGAAAAGGGGATCACTGAAGCAGAAGAGCTAGTGAGTGGTAGTGGTTTTGTGGAAGAAGGTATTAGGAATGAGGTGAGTGATGGTGGTGGTGATGATGATGATAGTTCAATAGGTGATGTTGATGTTTCGGAGCTGGTGGAGGAGAGGCTTGAGGAATTGGAAAGCAGAATGGTTGCTGATAGAGCAGAGAAAAAACAAGAGTCTTCAAAGAAGCCACTTGAATTGGCTGAGGAGCTGGAGAAGAAACATGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCTGCAGCCCAGCCGATGAGGCTAGAGGGTGTTCGGAGGGGGTCCACAACATTGGGATACTTTGATGTTGATGCTGATAATGCTGTATCAAGGGTCATTTCATCCCATACCTTCAGGCGTGAGCACGGTTCTGCTCAAGTCTTGGCAGTTCATGCTAATTACATTGCAGTAGGAATGGCCAAAGGTCTAATAGTTGTAGTGCCAAGTAAATATTCCATTCATCATGCAGACAACACCGATGGAAAGATGTTGATGCTTGCTATACAAGGTGATCGCTCACATGCTCCAGTGACATCCATGTCTTTTAATCAGCAAGGAGACCTTCTTTTAGCTGGTTACGGAGATGGTCATGTTACATTTTGGGATGTACAGAAAGGTGTTGTGGCAAAAGTTATTAATGGAGAGCATACAACACCTGTAGTACATATATTGTTTCTAGGGCAGGATCCTCAGAATAATCGTCAATTTAAAGCTGTTACTGGTGATTGTAAGGGTCTGGTTCTCTTGCACAGTATCTCAGTGGTCCCTTTGCTTAATAGATTCAACATCAAATCTCAGTGTCTTCTTGATGGGCAAAGAACGGGTTTGGTGCTATCAGCTTCACCACTCATTTTTGATGAATTCAGTGGAAGTGCCTCACCTTATTCTCAGGGAAACACCATGGTCTCGGCCAGCGGTATAAGTAGCATGATGGGAGGTGTTGTTGGGGGAGATGCAGGTTGGAAACTCTTCAATGAAGGCTCTTCTTTGGTTGAAGAAGGTGTGGTTGTATTTGTCACTCATCAAACTGCCTTGGTGGTACGCCTGAGTCCTAAATTGGAAGTCTATGCTCAAATCTCTAGGCCAGATGGAATTCGAGAGGGTTCCATGCCATATACTGCATGGAAATACATGGCACAAACAAGTAGTTCTTCTGAAAATATGTCCACAGAAACTACTGCAAGAGTTTCATTGCTTGCAATTGCTTGGGAACGGAAAGTTCAGGTTGCAAAATTGGTCAAATCAGAATTAAAAGTATATGGAAAATGGTCTCTTGACAGTGCAGCTATAGGTCTGGCATGGTTGGATGATCAGATGCTGGTAGTTCTCACTTCAACTGGACAACTGTATTTATTTGCCAAGGATGGAACTGTGATTCATCAAACCAGCTTTGCTGCAGATGGTATTGGAGGAGATGATCTAGTTTCTTATCATACACACTTGATCAATATATTTGGGAACCCTGAGAAAGCTTATCATAACTCTGTTGCTATAAGAGGAGCTTCTATTTATGTACTTGGTCCAGCACATCTTCTTGTTTCCCGTCTTCTCCCTTGGAAAGAGCGTATCTTGGTTTTACGGAAAGCGGGTGATTGGATGGGTGCCTTGAACATGGCAATGACTCTTTATGATGGCCATGCTCACGGAGTTGTTGATCTTCCTAGAACCTTGGATGCTGTACATGAGGCCATAATGCCCTTCTTGGTGGAGTTGCTTACATCATATGTAGATGAAGTTTTCTCCTATGTTTCAGTCGCATTCCGCAGCCAAATTGGAAAACTGGACCAATCCAATAATTCGAATAATAGAAGCAATTCAGTGCATTCTGAGATAAAGGAGCAATACACCCGTGTTGGTGGAGTTGCTGTTGAATTTTGTTGTCATATCAAACGGACAGACATTCTTTTTGATAAATTTTTTTCCAAGTTCGTGGATGTTCAACAGAGAGAAACATTTTTGGAGCTTCTGGAGCCATATATTTTGAAGGACATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTGGTAGAATATTATAGCACCAAAGGGTGGTTACAGAGAGTTGAGCAATGTGTACTTCACATGGATATTTCATCCTTGGATTTTAATCAGGTTGTCAGATTATGCCGGGAGCATGGACTATATAGTGCCCTAGTGTATCTCTTCAATAAAGGATTAGATGATTTTAGGGCACCTCTGGAGGAGCTGTTTGCAGTCTTGCAAAATAGCCAGAAAGAAATTGCTATTGCACTTGGGTATAGAATGCTAGTTTATCTCAAATACTGCTTTACAGGTCTTGCCTTTCCACCAGGCCATGGAACTATTTCTTCTAAACGCTTGCCATCTCTTAGAAAAGAACTTGTAGAGTTTTTGTTAGAGGACTCCAGATCTCTGAAACCACAGACAGTGTCAGACATTACATCCAGAAAGCCATACCTATATCTTTATCTTTTGTTAGAGTTAGACACTGAAGCAACATTAGACGTCCTCAGACGTGCTTTCGTGGAAGATGAAATTTCAAATGCCTGCTCGTCTTCACCGGATTCAGTCGATGGACCTATTGAAGAAGCACAAAAAGAAAATAATGTTGCTGAAACTCAAAATACTTTAGTTCAGAACACAGTAGATGCTCTCATACAAATAATTGATATGAATATTGTTCCAACTGATACAACCTCTTTCAGTGCTGATAATGAGTTAATGAAAGAGTGGCCTTCGAAGGACATAGGTTATATGTTTGAGTTCATTGCATATTATGTTGCTCTCCAAAGAGCTAAAGTTTCTAAGGGTGTGCTGTGTCAAATGTTGGAATATTTGACATCAGATAATCACTTTTCAAATAATGTTTCTGTTGATAGTTCAAGCCCAAAAATTAGAGAGAAGCAAGTGCTTTCTCTTCTGGAAGTACTTCCAGAGTCAGAATGGGATGCGTCATTTGTGCTAGAGCTATGTGAGAGCGCCAAATATCATCAGGTTTGTGGGTTGATTCATACCATCAGACATGAGTATGTGGCTGCATTGGATAGTTATATGAAAGATGTAGATGAGCCTGTTCATGCCTTCTCCTTTATCAACAAAGTGTTCTCAGAGTTGACTGACAAGGACCATACTGCTATTCGATCAGCAGTCTTATCCAGAATTCCTGATTTGGTTGAACTAAGCAGGGAAGGAGCATTCCATATGGTTATCAGTCATTTTAGTGATGAAAGTTCCCGTATCATCTCTGAACTCCATTCTCATCGAAGAAGTCTTTTCCTTTATTTAAAGACACTCATTGAGCTTCACTTATTTGGCACGCTAGACTTGTCTAATATGAGAAAGGTTGATATTATGAATCCCTGTAATGGAAAGCAAGTTATGGATCTCCCACAAGAAGTCCGTTATTACTTAGAGAATATATCCCATTTTCCCAAGTACATGCGTGAAAATCCTATTCAAGTGTCTGATGATCTTATTGAGCTTTACCTAGAGTTATTATGCCAGTATGAAGGTGGTTCAGTTCTCAAGTTTCTGGAAACATTTGATAGCTATCGCGTGGAGTATTGTTTACGCCTGTGCCAAGAATATGGCATTGTAGATGCTGCTGCTTTCTTATTAGAAAGGGTTGGTGATGTTGGTAGTGCTCTTCTACTTACACTTTCTGATCTGAATGGTAAATTTGTTGAGCTTGATGCTGCTGTGGAAGCTGTAGTTTTAAACCATCGCAAGGGTGGTTCTTCCCATATGGAAGTATTCAACAAAGTTTTAACAACAAAAGAGGTGAATGACATACACAATTTATTGCATGCCTGTATTGGTCTGTGTCAGCGGAACACTCCTCGTCTAAATCCCGAGGAGTCAGAGGCACATTGGTTTAAATTACTTGACTCGTTTTGTGACCCACTGATGGATTCATATGCTGAAGACAGAGCACGTGAAAGAAATAATTATTCTGGAATGCTAACTGGATCAGTGGATTCGCACCTGGACAAAGATACACATAAAAGCAATTGGAAAATTTCGATGTCTCGAAATGGTCATATCTTGAGAAAATTGCTTTCCCAGTTCATTAAAGAGATTGTAGAGGGAATGATAGGTTTTGTTCACCTTCCGACTATCATGGCCAAACTCTTGTCTGATAATGGTAGTCAAGAATTTGGCTATTTTAAACTTACCATATTGGGCATGCTGGGAACATATGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCCTTGATAGAGGATGATACATTTTATACCATGAGTTTACTCAAAAAAGGGGCCTCTCATGGATTTGCTCCCAGGAATTTAGTGTGCTGTATTTGTAATTGCCTCCTTACAAAGAACTCAGTTAGCTCTGGAATTCGAATTTTCAACTGTGGCCATGCAATCCACCTCCAATGTGAAGGTTCAGAAGCGGAGTCATCAAGCAAAGGATCTTCATCTGGTTGCCCTGTATGTTTGCCTAGCCAGAAATCCAAGCAGTCTAGAAACAAATTAGTCATGGCAGAGAATGGATTGGTCAACAAATTCTCATCAAGACGCCAACACCCTCATGGAAGTACTATTTATCTACACGACAATGATTTTTCAGAGAGTACATATGGACAGCAACAGATATCACGGTTTGAGATATTGAACAGCTTGCAGAAAAATCAGAGATTTATGCAAATAGAGAACTTGCCTCAGTTGAGGCTTGCTCCACCTGCTGTGTACCATGAAAAGGTAAGTAAAGTAACAGACTTTCTGACTGGAGAAAGCAGCAATAGATCTGCAGCCACCGAGAAACAAAGTAGAAACAAGCAGAACCGAGAGCTGAGAGTTAAGGGTTCATCAATTCGGTTTCCTTTAAAATCAAGTATATTCGGAAAAGAGAAGACAAATAAGCGGTGA 5631 0.4243 MELDLRSFIPSLAADTDDADDGPHRTIDEILNECDTSSSSSSPSPPSSPSQTSNTNSQPEPVPFSRVKPAQFPNPTRAPRPFSSLLDRIRPNTKPGAALAAAAAASRAVPTPHAAAIISRRKVVADLGSSIAGDDDGGSDVSSKGELGEKIDRKVENIDNKIEGSESEGFSSADAEIATEVEELKDGSADIQVHTDSSLVSEEKSDLDEFPENDIDSAPFDDVGGSGEKGIVDFVDVGEKGITEAEELVSGSGFVEEGIRNEVSDGGGDDDDSSIGDVDVSELVEERLEELESRMVADRAEKKQESSKKPLELAEELEKKHASTGLHLEEGAAAQPMRLEGVRRGSTTLGYFDVDADNAVSRVISSHTFRREHGSAQVLAVHANYIAVGMAKGLIVVVPSKYSIHHADNTDGKMLMLAIQGDRSHAPVTSMSFNQQGDLLLAGYGDGHVTFWDVQKGVVAKVINGEHTTPVVHILFLGQDPQNNRQFKAVTGDCKGLVLLHSISVVPLLNRFNIKSQCLLDGQRTGLVLSASPLIFDEFSGSASPYSQGNTMVSASGISSMMGGVVGGDAGWKLFNEGSSLVEEGVVVFVTHQTALVVRLSPKLEVYAQISRPDGIREGSMPYTAWKYMAQTSSSSENMSTETTARVSLLAIAWERKVQVAKLVKSELKVYGKWSLDSAAIGLAWLDDQMLVVLTSTGQLYLFAKDGTVIHQTSFAADGIGGDDLVSYHTHLINIFGNPEKAYHNSVAIRGASIYVLGPAHLLVSRLLPWKERILVLRKAGDWMGALNMAMTLYDGHAHGVVDLPRTLDAVHEAIMPFLVELLTSYVDEVFSYVSVAFRSQIGKLDQSNNSNNRSNSVHSEIKEQYTRVGGVAVEFCCHIKRTDILFDKFFSKFVDVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYLFNKGLDDFRAPLEELFAVLQNSQKEIAIALGYRMLVYLKYCFTGLAFPPGHGTISSKRLPSLRKELVEFLLEDSRSLKPQTVSDITSRKPYLYLYLLLELDTEATLDVLRRAFVEDEISNACSSSPDSVDGPIEEAQKENNVAETQNTLVQNTVDALIQIIDMNIVPTDTTSFSADNELMKEWPSKDIGYMFEFIAYYVALQRAKVSKGVLCQMLEYLTSDNHFSNNVSVDSSSPKIREKQVLSLLEVLPESEWDASFVLELCESAKYHQVCGLIHTIRHEYVAALDSYMKDVDEPVHAFSFINKVFSELTDKDHTAIRSAVLSRIPDLVELSREGAFHMVISHFSDESSRIISELHSHRRSLFLYLKTLIELHLFGTLDLSNMRKVDIMNPCNGKQVMDLPQEVRYYLENISHFPKYMRENPIQVSDDLIELYLELLCQYEGGSVLKFLETFDSYRVEYCLRLCQEYGIVDAAAFLLERVGDVGSALLLTLSDLNGKFVELDAAVEAVVLNHRKGGSSHMEVFNKVLTTKEVNDIHNLLHACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLMDSYAEDRARERNNYSGMLTGSVDSHLDKDTHKSNWKISMSRNGHILRKLLSQFIKEIVEGMIGFVHLPTIMAKLLSDNGSQEFGYFKLTILGMLGTYGFERRILDAAKSLIEDDTFYTMSLLKKGASHGFAPRNLVCCICNCLLTKNSVSSGIRIFNCGHAIHLQCEGSEAESSSKGSSSGCPVCLPSQKSKQSRNKLVMAENGLVNKFSSRRQHPHGSTIYLHDNDFSESTYGQQQISRFEILNSLQKNQRFMQIENLPQLRLAPPAVYHEKVSKVTDFLTGESSNRSAATEKQSRNKQNRELRVKGSSIRFPLKSSIFGKEKTNKR* 1877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1697 1876 MobiDBLite consensus disorder prediction 17 31 - -
Lja3g1697 1876 ProSiteProfiles Zinc finger RING-type profile. 1685 1733 IPR001841 -
Lja3g1697 1876 SMART ring_2 1685 1733 IPR001841 -
Lja3g1697 1876 Pfam Golgi CORVET complex core vacuolar protein 8 902 1086 IPR025941 -
Lja3g1697 1876 Gene3D - 343 504 IPR015943 GO:0005515
Lja3g1697 1876 PANTHER - 235 1804 - -
Lja3g1697 1876 Coils Coil 281 308 - -
Lja3g1697 1876 MobiDBLite consensus disorder prediction 1831 1855 - -
Lja3g1697 1876 Coils Coil 1106 1126 - -
Lja3g1697 1876 CDD RING-H2 1685 1733 - -
Lja3g1697 1876 SUPERFAMILY RING/U-box 1679 1734 - -
Lja3g1697 1876 SUPERFAMILY WD40 repeat-like 378 711 IPR036322 GO:0005515
Lja3g1697 1876 SMART WD40_4 412 453 IPR001680 GO:0005515
Lja3g1697 1876 ProSiteProfiles Trp-Asp (WD) repeats profile. 428 462 IPR001680 GO:0005515
Lja3g1697 1876 MobiDBLite consensus disorder prediction 129 152 - -
Lja3g1697 1876 MobiDBLite consensus disorder prediction 1 90 - -
Lja3g1697 1876 Pfam Region in Clathrin and VPS 1373 1466 IPR000547 GO:0006886|GO:0016192
Lja3g1697 1876 MobiDBLite consensus disorder prediction 196 227 - -
Lja3g1697 1876 MobiDBLite consensus disorder prediction 32 62 - -
Lja3g1697 1876 PANTHER VACUOLAR PROTEIN SORTING VPS41 235 1804 IPR045111 GO:0006623
Lja3g1697 1876 ProSitePatterns Trp-Asp (WD) repeats signature. 440 454 IPR019775 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1697 K20178 - gmx:100780869 2800.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1697 3 18804642 18822193 Lja3g1697 3 18804642 18822193 ECH