Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1695 ATGTCTTTCACTGCGACCAAATTCTCCCACCTTCCTCCTCCTATCAATTCCACCATCCCCAGATCCAATGACAACAAGCCTCTCTCCTTCGATGTTTCCAGAGCTAACCCTTCTTCCTCTTTCCTTGGATCCGCTCGCAAGGTGCTTCGCTTCAATGCGGGCCCCGCTAAGGTTCTTGCTCAGCGCCGTTCTTCTTCTTCTTCCCCTGCTGCTGCTGTTCTTCTCGAACGAACCTCCAATCTGCTTATCACAAAAGAGGAAGGGTTGGAGCTCTATGAAGACATGATATTAGGGAGGTTCTTTGAAGACAAGTGTGCCGAGATGTATTATAGGGGCAAAATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAAGCTGTGTCAACTGGATTCATCAAGCTTCTGAAGAAAGAAGATAGTGTAGTGAGCACCTACAGGGACCATGTTCATGCACTGAGTAAAGGGGTCCCGGCACGGGCTGTGATGAGTGAACTCTTTGGGAAGGCGACGGGAGTCTGCCGAGGTCAGGGGGGTTCGATGCATATGTTCTCAAAAGAGCACAACGTGCTCGGTGGGTTTGCATTCATTGGTGAAGGAATTCCAGTGGCCACCGGGGCAGCATTTTCCAGCAAGTACAGAAGAGAGGTATTGAATCAGGCAGATTGTGATCATGTGACATTGGCATTCTTTGGAGATGGAACTTGTAACAATGGACAGTTCTATGAATGCCTTAACATGGCTGCTTTGTGGAAGTTGCCAATTGTGTTTGTGGTGGAAAATAATTTGTGGGCCATTGGGATGTCACATCTCAGGGCAACTTCAGATCCTGAGATATGGAAAAAGGGGCCAGCATTTGGAATGCCAGGGGTTCATGTAGACGGGATGGACGTTTTGAAGGTCAGGGAGGTGGCAAAGGAGGCGATTGGAAGGGCTAGAAGAGGAGAGGGACCAACTCTAGTGGAATGTGAGACCTATAGATTTAGAGGACACTCATTGGCTGATCCCGATGAGCTTCGTGACCCAGCTGAGAAGGAACACTATGCTGGTAGGGATCCCATCACTGCATTGAAGAAATACATTTTTGAAAACAATTTAGCCAGTGAACAAGAATTGAAGGCCATAGAGAAGAAAATTGACGAGGTCCTTGAAGAAGCTGTTGAATTTGCAGATGAGAGCCCTCTTCCACCCCGCAGCCAGCTTCTGGAGAATGTCTTTGCTGATCCCAAAGGTTTTGGTATTGGGCCTGATGGCAAGTATAGGTGTGAGGATCCAAAATTCACCGAAGGCACTGCTCATGTCTAA 1302 0.4785 MSFTATKFSHLPPPINSTIPRSNDNKPLSFDVSRANPSSSFLGSARKVLRFNAGPAKVLAQRRSSSSSPAAAVLLERTSNLLITKEEGLELYEDMILGRFFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGVCRGQGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFSSKYRREVLNQADCDHVTLAFFGDGTCNNGQFYECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIGRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKEHYAGRDPITALKKYIFENNLASEQELKAIEKKIDEVLEEAVEFADESPLPPRSQLLENVFADPKGFGIGPDGKYRCEDPKFTEGTAHV* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1695 433 Coils Coil 364 391 - -
Lja3g1695 433 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 85 406 IPR017597 GO:0004739|GO:0006086|GO:0043231
Lja3g1695 433 CDD TPP_E1_PDC_ADC_BCADC 91 389 - -
Lja3g1695 433 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 80 408 IPR029061 -
Lja3g1695 433 Gene3D - 57 415 - -
Lja3g1695 433 Pfam Dehydrogenase E1 component 95 395 IPR001017 GO:0016624
Lja3g1695 433 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA 13 433 - -
Lja3g1695 433 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 13 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1695 Lja-Chr3 18784574 18788114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1695 5 433 Acyl Lipid Metabolism Gene Families AT1G01090 78.571 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1695 K00161 - gmx:100811207 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1695 3 18784574 18788114 Lja3g1695 3 18784574 18788114 ECH