Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1677 ATGGTTGTAGCTGCAGGTTCTAAGCTGAGAAGAGGGAACTGTTCTTCTCATAGTGTTGTTATCAATGATTATAATAACAGTGATGGTGAAATTTCTAGAGTTAAGAAGAGTGGGAGTTTTTCAGCACTGGGAGAGGTGAATAGAGACCATTCATGTGTTTCATTTACCACTTTCAACATCCTAGCTCCTATTTACAAACGGATTGATCCACAGAACCAGGGCCTCCGAGAGAGTGACACGAGATCATTCTGGTTGGCCAGGAACCAGAGGATTCTAGATGGCTTGCTTGCTGAATCATCTTCCATTATGTGCCTTCAGGAATTTTGGGTCGGAAATGAAGAACTTGTTCACATGTATGAGGAGAGACTTGGAAATGCTGGCTACCATCTCTTCAAGCTCGCCCGAACCAACAACCGTGGAGATGGTCTTCTGACTGCTATACACAAAGAATATTTGAGTGTTGTAAACTATCGGGAGTTGCTTTTTAATGATTTCGGTGATCGTGTCGCACAGTTGTTACATGTTCAATCGGCTGCTCCGTTATTACCAAACCAAAAGGGCAGTCTTCACCAAGAGTTTCTGATTGTGAACACCCACTTGTTATTTCCTCATGATTCGAGCCTGTCTATAGTTAGATTGCAGCAGGTTTACCAAATATTACAGCATGTGGAAGCATATCAGAAAGAAAACAGGCTCAAATCCATGCCTATTATACTCTGTGGTGACTGGAATGGAAGCAAGCGTGGGCATGTTTACAAGTTCCTTAGGTCTCAGGGGTTTGTATCATCCTATGACATTGCTAATAAATACACTGACAGTTATGCAGATGCTCACAAGTGGGTTAGTCACCGAAATCATAGAGGAAATATATGTGGTGTTGACTTCATTTGGCTTTTCAATCCTAACCAAGCAAGAAAACCCTTGAAGACAAGTTGGGCTGAAGCTGTTTTTAGTATAATAAAGTTCCAGTTACGAAAAGCTTCATTGTCCGAAGATGATGCATTTGCATTTCTGAAGGGTGACAACTGTGCTGATGCTATAACATATTTTAGCTTTTCTGAAGCACTCCGTCAGGTAAATTTAATTGGTGTGCCTTATGGACTATGCTTTCAACAGTTGCAAGATCTATGGAATCAAGCGGATGATGATGGAAATGGTCTCATTGACTATGAAGAATTCAAGGAGAAGATCTGGAATTCTTCATGTCCAGAGCTTGCATTTGAAAATTTCTTGGGTTGTATGGAAGAGGCTAAAACAGAGGAGGATCAAGAAGCCATTGGTTTTAAGGTGAAAAATGCAATGTTGTTCCCACGTGAAGTGGAGAAAGGACTGTGGCCAGAAGACTACTCTCTTTCTGATCATGCTAGGTTAACTGTTGTCTTCTCACCAGTAAGATGCCATGTTCAAGGCCACAAATTGTAG 1422 0.4135 MVVAAGSKLRRGNCSSHSVVINDYNNSDGEISRVKKSGSFSALGEVNRDHSCVSFTTFNILAPIYKRIDPQNQGLRESDTRSFWLARNQRILDGLLAESSSIMCLQEFWVGNEELVHMYEERLGNAGYHLFKLARTNNRGDGLLTAIHKEYLSVVNYRELLFNDFGDRVAQLLHVQSAAPLLPNQKGSLHQEFLIVNTHLLFPHDSSLSIVRLQQVYQILQHVEAYQKENRLKSMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANKYTDSYADAHKWVSHRNHRGNICGVDFIWLFNPNQARKPLKTSWAEAVFSIIKFQLRKASLSEDDAFAFLKGDNCADAITYFSFSEALRQVNLIGVPYGLCFQQLQDLWNQADDDGNGLIDYEEFKEKIWNSSCPELAFENFLGCMEEAKTEEDQEAIGFKVKNAMLFPREVEKGLWPEDYSLSDHARLTVVFSPVRCHVQGHKL* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1677 473 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Lja3g1677 473 ProSiteProfiles EF-hand calcium-binding domain profile. 368 403 IPR002048 GO:0005509
Lja3g1677 473 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 21 468 - -
Lja3g1677 473 SUPERFAMILY DNase I-like 50 272 IPR036691 -
Lja3g1677 473 Pfam Endonuclease/Exonuclease/phosphatase family 58 267 IPR005135 GO:0003824
Lja3g1677 473 SUPERFAMILY EF-hand 336 396 IPR011992 -
Lja3g1677 473 Gene3D Endonuclease/exonuclease/phosphatase 39 465 IPR036691 -
Lja3g1677 473 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 21 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1677 Lja-Chr3 18554031 18558009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1677 118 465 EF-hand Containing Proteins AT1G02270 66.667 5.43e-172 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1677 - - gmx:100777138 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1677 3 18554031 18558009 Lja3g1677 3 18554031 18558009 ECH