Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1662 ATGGCGGAGAAATCCTGCATCAAGCGCCTTCAGAAGGAATATAGAGCCCTTTGTAAAGAGCCAGTCTCCCATGTCGTGGCTCGTCCTTCTCCGAGTGATATTCTTGAGTGGCATTATGTCTTGGAGGGAAGCGAAGGAACACCTTTTTCAGGTGGATATTACTATGGAAAAATCAAATTTCCCCCTGAATATCCATACAAACCTCCTGGAATCAGCATGACTACGCCCAATGGACGGTTCATGACACAGAAAAAAATCTGTTTGTCTATGAGTGATTTTCATCCAGAAACTTGGAATCCTATGTGGTCTGTATCAAGCATACTTACAGGGCTTCTTTCATTCATGATGGATACCAGTCCAACCACTGGCAGTGTTACCACCACTACTGCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAATTGTAAGAATGCAACATTCAGGAAAATGTTCCCCGAGTATGTGGAGAAGTACAACCAGCAGCTGCTTTCTGAGCAAGTTGCATCTGAGCAGGTGTCATCAGAAATGTCTCATGTCAAAAGTTCAAGACCTGTTTTGGAAAGGAGTTTAGATTCCGCTGGAGAAGACGTGAAAATGGTAGATGGGAAAGATGTGAGGAAAAATAGGAAGCGACCATTTCCAACGTGGATGATGCTATTACTCTTCTCCATCTTTGGGGTTGTAATGGCGTTACCTCTGCTTCAGCTGTGA 717 0.4393 MAEKSCIKRLQKEYRALCKEPVSHVVARPSPSDILEWHYVLEGSEGTPFSGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPETWNPMWSVSSILTGLLSFMMDTSPTTGSVTTTTAEKQRLAKSSLSFNCKNATFRKMFPEYVEKYNQQLLSEQVASEQVSSEMSHVKSSRPVLERSLDSAGEDVKMVDGKDVRKNRKRPFPTWMMLLLFSIFGVVMALPLLQL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1662 238 Pfam Ubiquitin-conjugating enzyme 9 123 IPR000608 -
Lja3g1662 238 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
Lja3g1662 238 SUPERFAMILY UBC-like 5 157 IPR016135 -
Lja3g1662 238 Gene3D Ubiquitin Conjugating Enzyme 1 178 IPR016135 -
Lja3g1662 238 SMART ubc_7 8 162 - -
Lja3g1662 238 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 238 - -
Lja3g1662 238 CDD UBCc 7 117 IPR000608 -
Lja3g1662 238 PANTHER BNAA06G11590D PROTEIN 3 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1662 Lja-Chr3 18399663 18401948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1662 1 238 Miscellaneous Gene Families AT1G17280 74.790 1.09e-134 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1662 K04554 - gmx:100778181 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1662 3 18399663 18401948 Lja3g1662 3 18399663 18401948 ECH